Browse Element(s) Details


Os.46400.2.S1_x_at

Description gb:NM_197803.1
DB_XREF= gi:37536965
TID=Os.46400.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0057L21.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0057L21.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4177011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41710Os.9219.1.S1_at10/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41710Os.49478.1.S1_at1/1110+22123410..22126805chloroplast chaperonin 10, putative, expressed
LOC_Os10g41720Os.46570.1.S1_at11/1110+22128025..22131071Peroxidase family protein, expressed
LOC_Os10g41730Os.46061.1.S1_at10/1110+22134674..22136863pentatricopeptide, putative, expressed
LOC_Os10g41740OsAffx.6938.1.S1_at11/1110+22137345..22138934pentatricopeptide, putative, expressed
LOC_Os10g41749Os.49139.1.S1_at11/1110+22139306..22143017CrcB-like protein, expressed
LOC_Os10g41760Os.46568.1.S1_at11/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41760Os.17037.1.S1_a_at1/1110+22143816..22147517chlorophyll a oxygenase, putative, expressed
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein
LOC_Os10g41810NANA10+22172933..22173166hypothetical protein
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46400.2.S1_x_at--335--6331Chr10:22151664..22151776 (25 bp)
GATGCACCCATCACAGAAACCAAAT
LOC_Os10g41770
Os.46400.2.S1_x_at--631--5511Chr10:22151834..22151858 (25 bp)
GAACAATGAACGTGCTCTTTGGTCA
LOC_Os10g41770
Os.46400.2.S1_x_at--319--3691Chr10:22151850..22151874 (25 bp)
CTTTGGTCATCTGCAGTTCCTGAAA
LOC_Os10g41770
Os.46400.2.S1_x_at--918--5591Chr10:22151892..22151916 (25 bp)
GAAATAGTCCATCCTTCCAACAGGG
LOC_Os10g41770
Os.46400.2.S1_x_at--601--9791Chr10:22152108..22152132 (25 bp)
TAAGCTATGGTCCTGGTTATACCCA
LOC_Os10g41770
Os.46400.2.S1_x_at--12--4191Chr10:22152129..22152153 (25 bp)
CCCAGTTGCCATTGCTTTGTCAAAA
LOC_Os10g41770
Os.46400.2.S1_x_at--117--3491Chr10:22152165..22152189 (25 bp)
CAGGCTATGGGATTTCACAGCACAT
LOC_Os10g41770
Os.46400.2.S1_x_at--153--5331Chr10:22152239..22152263 (25 bp)
GAAGTTCCAGGGACCGGCTTATGAA
LOC_Os10g41770
Os.46400.2.S1_x_at--544--10431Chr10:22152281..22152305 (25 bp)
TTAGATTTCCTACTACCCGAAGCTG
LOC_Os10g41770
Os.46400.2.S1_x_at--513--591Chr10:22152317..22152341 (25 bp)
ATGCCGGTAGCCTGGTTGTTACCTA
LOC_Os10g41770
Os.46400.2.S1_x_at--42--10811Chr10:22152332..22152356 (25 bp)
TTGTTACCTATGTTGGCTCCGATAA
LOC_Os10g41770
Target Sequence 
GATGCACCCATCACAGAAACCAAATATTAATATCAAAGCAACTGCTCCAAGAGGGTGCTGACATTTGGAGTATAATCTCA
AAGAACAATGAACGTGCTCTTTGGTCATCTGCAGTTCCTGAAATGAAAGCAAAATTTTTGGAAATAGTCCATCCTTCCAA
CAGGGGTTTGTCGGAGCAGGATTTTGAGGTTTTAAGAGGAATTGCTGGTTGTGGTGATGACATTGGAAGAGACGAGTTTG
ATAAGCTATGGTCCTGGTTATACCCAGTTGCCATTGCTTTGTCAAAAGACAAAATAAACAGGCTATGGGATTTCACAGCA
CATAGATGGATAGAGGGATTGATTACATTACAGGAAACTGAGAATGCGCTAAGAAGTTCCAGGGACCGGCTTATGAAGCC
AGGAACATTTGTCCTTAGATTTCCTACTACCCGAAGCTGGCCACATCCAGATGCCGGTAGCCTGGTTGTTACCTATGTTG
GCTCCGATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46400.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis