Browse Element(s) Details


Os.46459.1.S1_at

Description gb:AK100196.1
DB_XREF= gi:32985405
TID=Os.46459.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46459 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative MATH domain containing protein (OSJNBa0029C15.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037J02, full insert sequence.
FL= gb:AK100196.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g388401/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g021201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g090801/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g438801/11hypothetical protein
LOC_Os03g274001/11transposon protein, putative, unclassified
LOC_Os04g070101/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38800OsAffx.5052.1.S1_at11/116+23032949..23033371hypothetical protein
LOC_Os06g38810OsAffx.20993.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810OsAffx.27266.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38810Os.51832.1.S1_at1/116+23038210..23040955hypothetical protein
LOC_Os06g38820OsAffx.19542.3.S1_x_at3/116+23043215..23047155retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g38830OsAffx.15825.1.S1_at11/116+23048806..23051319Leucine Rich Repeat family protein, expressed
LOC_Os06g38840OsAffx.15826.1.S1_at2/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38840Os.46459.1.S1_at1/116+23053425..23055664transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g38850OsAffx.27999.1.S1_at11/116+23056312..23056587hypothetical protein
LOC_Os06g38870OsAffx.15826.1.S1_at9/116+23065612..23067154hypothetical protein
LOC_Os06g38870Os.19061.2.S1_at1/116+23065612..23067154hypothetical protein
LOC_Os06g38880OsAffx.5053.1.S1_at11/116+23068891..23069148hypothetical protein
LOC_Os06g38890Os.41695.15.S1_s_at11/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.3.S1_x_at4/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.2.S1_x_at3/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.5.S1_x_at3/116+23072514..23078699hypothetical protein
LOC_Os06g38890Os.41695.4.S1_x_at1/116+23072514..23078699hypothetical protein
LOC_Os06g38900NANA6+23080487..23083994SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46459.1.S1_at--536--2051Chr10:18024539..18024563 (25 bp)
ACTTGTTCACCGAGAAGTCGTTGGG
NONE
Os.46459.1.S1_at--510--7752Chr10:18024373..18024397 (25 bp)
GGTGTTGCTGGGAGACCGGGCCTCT
NONE
Os.46459.1.S1_at--172--9511Chr10:18024351..18024375 (25 bp)
TCTCGGCGCGTAGCAGATGCGCCAG
NONE
Os.46459.1.S1_at--613--1311Chr10:18024291..18024315 (25 bp)
AGATGGGCTGGCAGCTCCCATTAAA
NONE
Os.46459.1.S1_at--978--6191Chr10:18024154..18024178 (25 bp)
GAGGCCGCTTGGTGAGTCGATTTTT
NONE
Os.46459.1.S1_at--283--7511Chr10:18024103..18024127 (25 bp)
GTGGTTTAGATGTTTTGCTCTGTGA
NONE
Os.46459.1.S1_at--15--751Chr10:18024094..18024118 (25 bp)
ATGTTTTGCTCTGTGAATGAATCTA
NONE
Os.46459.1.S1_at--668--5271Chr10:18024080..18024104 (25 bp)
GAATGAATCTATGGATCGATGTTAA
NONE
Os.46459.1.S1_at--845--88928Chr11:9832599..9832623 (25 bp)
TGAGTATGTGACTCGATGTTGTCAA
NONE
Os.46459.1.S1_at--69--6291Chr10:18024021..18024045 (25 bp)
GATGTTGTCAATGAACCCGCGAATC
NONE
Os.46459.1.S1_at--683--5431Chr10:18024009..18024033 (25 bp)
GAACCCGCGAATCAATATTGTGAAC
NONE
Target Sequence 
ACTTGTTCACCGAGAAGTCGTTGGGGGTGGTGATGGTGTAGGACGGCTTNGGGCTTCGGCTGCCGGCGGCGGTTGAGGCA
GAAGGTGTGGCCTGCACCACCACCGGCTCGGCGGTGGTGGCGGACTCGTCGCCGTCGTCGAGCGAGAGGTGGAAGGAGAT
GAAGTCGGTGTTGCTGGGAGACCGGGCCTCTCGGCGCGTAGCAGATGCGCCAGGCGCGGCAGGCCGCCGACGCGGAACGG
GCGGGAGGAGATGGGCTGGCAGCTCCCATTAAATGGGCGTGGGCCGGTGGGACGGAGGCCGGTCGCCGGCGGCCTCGCCC
TCCCCTCCCCCAGATCCGGCCGGAGGGGAAGCGGCGGGATGGGTGGCCGGCCGGCGGCGGGATGGGAGGCCGCTTGGTGA
GTCGATTTTTTTTGTTTTTTTGATTTTTTTTTATTTGTGGTTTAGATGTTTTGCTCTGTGAATGAATCTATGGATCGATG
TTAATGAATCTGTGATGTTATAAATGAGTATGTGACTCGATGTTGTCAATGAACCCGCGAATCAATATTGTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis