Browse Element(s) Details


Os.46479.2.S1_x_at

Description gb:NM_197822.1
DB_XREF= gi:37537003
TID=Os.46479.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46479 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0095C07.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0095C07.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4197011/11Methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41900OsAffx.7905.1.S1_at11/1110+22215169..22219060NB-ARC domain containing protein
LOC_Os10g41910OsAffx.30749.1.S1_at11/1110+22219464..22220513hypothetical protein
LOC_Os10g41920OsAffx.30750.1.S1_at11/1110+22222678..22223124hypothetical protein
LOC_Os10g41920OsAffx.9822.1.S1_x_at1/1110+22222678..22223124hypothetical protein
LOC_Os10g41930Os.4741.2.S1_x_at11/1110+22226085..22228326haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os10g41940Os.9077.1.S1_at10/1110+22228657..22232194expressed protein
LOC_Os10g41950Os.50905.1.S1_at11/1110+22232554..22233379expressed protein
LOC_Os10g41960Os.37950.1.S1_at11/1110+22233675..22238062Eukaryotic translation initiation factor 3 subunit 9, putative, expressed
LOC_Os10g41970Os.46479.2.S1_x_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41970Os.46479.1.S1_at11/1110+22239213..22243571Methyltransferase, putative, expressed
LOC_Os10g41980Os.4152.1.S1_at11/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46616.1.S1_x_at6/1110+22245523..22246842expressed protein
LOC_Os10g41980Os.46393.1.S1_x_at4/1110+22245523..22246842expressed protein
LOC_Os10g41999Os.46393.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_at11/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46393.1.S1_x_at10/1110+22249213..22253609expressed protein
LOC_Os10g41999Os.46616.1.S1_x_at8/1110+22249213..22253609expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_x_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.1.S1_at11/1110+22258147..22262443expressed protein
LOC_Os10g42020Os.16615.1.S1_at7/1110+22258147..22262443expressed protein
LOC_Os10g42020OsAffx.29329.2.S1_x_at5/1110+22258147..22262443expressed protein
LOC_Os10g42024NANA10+22262872..22263237NA
LOC_Os10g42030OsAffx.18604.1.S1_at10/1110+22265389..22271637expressed protein
LOC_Os10g42030OsAffx.18604.1.S1_x_at9/1110+22265389..22271637expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46479.2.S1_x_at--350--7711Chr10:22242404..22242428 (25 bp)
GGGTCGCACCCCAGGTGTTACAGAA
LOC_Os10g41970
Os.46479.2.S1_x_at--918--10411Chr10:22242523..22242547 (25 bp)
TTATGGACATGAACGCAGGGCTTGG
LOC_Os10g41970
Os.46479.2.S1_x_at--813--6631Chr10:22242594..22242618 (25 bp)
GTTGTGCCCACAATATCTGAGAAGA
LOC_Os10g41970
Os.46479.2.S1_x_at--91--1431Chr10:22242616..22242640 (25 bp)
AGAACACTCTTGGTATCATTTACGA
LOC_Os10g41970
Os.46479.2.S1_x_at--157--4091Chr10:22242638..22242662 (25 bp)
CGAGCGAGGTCTTATTGGCATATAC
LOC_Os10g41970
Os.46479.2.S1_x_at--638--1731Chr10:22242661..22242782 (25 bp)
ACCATGATTGGTGTGAAGCCTTCTC
LOC_Os10g41970
Os.46479.2.S1_x_at--979--5411Chr10:22242772..22242796 (25 bp)
GAAGCCTTCTCTACATATCCTAGGA
LOC_Os10g41970
Os.46479.2.S1_x_at--668--8131Chr10:22242794..22242818 (25 bp)
GGACATACGACTTGATACATGCCAA
LOC_Os10g41970
Os.46479.2.S1_x_at--361--591Chr10:22242812..22242836 (25 bp)
ATGCCAATGGTCTCTTCAGCTTATA
LOC_Os10g41970
Os.46479.2.S1_x_at--735--11Chr10:22243026..22243050 (25 bp)
ATTTTACGTCCTGAGGGCGCAGTCA
LOC_Os10g41970
Os.46479.2.S1_x_at--739--5351Chr10:22243134..22243158 (25 bp)
GAAGATGGGCCTCATATACCTGAGA
LOC_Os10g41970
Target Sequence 
GGGTCGCACCCCAGGTGTTACAGAAGAAATTTTTGAGGAGGATAATAAGTTGTGGAAGAAGTATGTCAGTACTTACAAGA
GGATAAACAAGCTGATAGGTTCTTTGAGGTATAGGAATATTATGGACATGAACGCAGGGCTTGGAAGTTTTGCGGCAATT
ATTGATTCTCCAATATCTTGGGTAATGAATGTTGTGCCCACAATATCTGAGAAGAACACTCTTGGTATCATTTACGAGCG
AGGTCTTATTGGCATATACCATGATTGGTGTGAAGCCTTCTCTACATATCCTAGGACATACGACTTGATACATGCCAATG
GTCTCTTCAGCTTATACCAGAATAAGTGCAACATGGAAGACATTCTTCTGGAGATGGATAGGATTTTACGTCCTGAGGGC
GCAGTCATACTGCGGGACAATGTTGAGGTGCTGAACAAGGTTAGGAGGACAGTGATGGGGATGCGGTGGAAATCCAAGTT
GCTTGATCATGAAGATGGGCCTCATATACCTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46479.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis