Browse Element(s) Details


Os.46839.1.S1_at

Description gb:AK108480.1
DB_XREF= gi:32993689
TID=Os.46839.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46839 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0012A20.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F03, full insert sequence.
FL= gb:AK108480.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0230011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02260Os.21957.2.S1_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.2.S1_x_at11/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_x_at10/1110+789816..793898POT family protein, expressed
LOC_Os10g02260Os.21957.1.S1_at7/1110+789816..793898POT family protein, expressed
LOC_Os10g02270NANA10+797132..797852expressed protein
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein
LOC_Os10g02340OsAffx.20797.1.S1_at11/1110+820900..823141POT family protein, expressed
LOC_Os10g02340Os.4008.2.S1_x_at1/1110+820900..823141POT family protein, expressed
LOC_Os10g02350Os.46462.1.S1_at11/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02350Os.46462.2.S1_x_at9/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02360Os.21379.1.S1_at11/1110+832317..834357Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46839.1.S1_at--355--5791Chr10:810019..810210 (25 bp)
GACGACTGCAACACCTGTTGTATGG
LOC_Os10g02300
Os.46839.1.S1_at--523--8711Chr10:809972..809996 (25 bp)
TGTCGGCCAGATCGCAGAAATCGTC
LOC_Os10g02300
Os.46839.1.S1_at--976--7571Chr10:809815..809966 (25 bp)
GGGCTCATCATCGTGCGCGTTGAAC
LOC_Os10g02300
Os.46839.1.S1_at--952--6651Chr10:809797..809821 (25 bp)
GTTGAACGCGGTGCTGTACTGCCTG
LOC_Os10g02300
Os.46839.1.S1_at--583--9911Chr10:809781..809805 (25 bp)
TACTGCCTGGTGTTCCACGTGTCGG
LOC_Os10g02300
Os.46839.1.S1_at--218--4431Chr10:809747..809771 (25 bp)
GCCAGTGGGTGTACTCGTGCGCCTA
LOC_Os10g02300
Os.46839.1.S1_at--1078--3791Chr10:809149..809173 (25 bp)
CTCCCCAACACCAAGCGATGGAAGG
LOC_Os10g02300
Os.46839.1.S1_at--1080--8191Chr10:809130..809154 (25 bp)
GGAAGGAATGACAACTCCCTCATAA
LOC_Os10g02300
Os.46839.1.S1_at--484--4291Chr10:809089..809113 (25 bp)
CCTCTCGATCGACCAAACAATACAT
LOC_Os10g02300
Os.46839.1.S1_at--906--1531Chr10:809041..809065 (25 bp)
AGCATGTACACCCTTTGATTTATAA
LOC_Os10g02300
Os.46839.1.S1_at--1077--6251Chr10:808998..809022 (25 bp)
GATGTGTGACGCTTATTTTATTTTA
LOC_Os10g02300
Target Sequence 
GACGACTGCAACACCTGTTGTATGGCGTGCTGGTGCCCGTGCATCCCTGTCGGCCAGATCGCAGAAATCGTCGACAGGGG
CTCATCATCGTGCGCGTTGAACGCGGTGCTGTACTGCCTGGTGTTCCACGTGTCGGCGGGGATGTGCCAGTGGGTGTACT
CGTGCGCCTACCGNGCTCGCCTCCGGGCGGNGTACGACCTGCCGGAGACGCCNTGCTCCGACTGCCTCGTCACCTTCTGC
TNCCAGACCTGCTCCNATCGCACAGATGCACCGTGAGCTNCAAGAACCNCGGNCNCGACCCTAACCTTGGNTNNGAGGTG
AACTCGCGGAGGACGATGATGACTCCTCCCCAACACCAAGCGATGGAAGGAATGACAACTCCCTCATAACAACTACTCAT
CATCACCTCTCGATCGACCAAACAATACATACACACGATATATAGCTATTACAAGCATGTACACCCTTTGATTTATAAAG
TGGCAATACATATATAGATGTGTGACGCTTATTTTATTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis