Browse Element(s) Details


Os.46862.1.S1_at

Description gb:AK106927.1
DB_XREF= gi:32992136
TID=Os.46862.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0072A12.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B11, full insert sequence.
FL= gb:AK106927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6407010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g388208/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g150806/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g185705/11retrotransposon protein, putative, unclassified
LOC_Os09g158905/11retrotransposon protein, putative, unclassified
LOC_Os07g059845/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g230704/11hypothetical protein
LOC_Os11g218303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g389403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g059002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g186202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g313502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g045202/11retrotransposon protein, putative, unclassified
LOC_Os01g256882/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g064301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g399501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g439401/11hypothetical protein
LOC_Os04g057101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g118601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g203201/11hypothetical protein
LOC_Os09g087401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64020Os.42388.1.S1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.42388.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020OsAffx.23909.1.S1_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.25548.1.A1_x_at11/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64020Os.52227.1.S1_at1/111+37508354..37515429Transcription factor HBP-1b, putative, expressed
LOC_Os01g64030Os.26365.1.S1_at11/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.19541.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64030Os.5606.1.S1_at1/111+37517284..37524641F-box family protein, putative, expressed
LOC_Os01g64040NANA1+37525182..37525692expressed protein
LOC_Os01g64050NANA1+37528099..37531259hypothetical protein
LOC_Os01g64060NANA1+37531704..37532972retrotransposon protein, putative, unclassified
LOC_Os01g64070Os.46862.1.S1_at10/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.22385.1.S1_x_at5/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64070OsAffx.20329.1.S1_at2/111+37537699..37543973retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g64080OsAffx.16451.1.A1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.22699.1.S1_x_at2/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.16451.1.A1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080Os.45161.1.A1_x_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64080OsAffx.8279.1.S1_at1/111+37549567..37555857retrotransposon protein, putative, unclassified
LOC_Os01g64090Os.11487.1.S1_s_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64090OsAffx.2398.1.S1_at11/111+37558356..3756150060S ribosomal protein L10a-1, putative, expressed
LOC_Os01g64100Os.28531.1.S1_at11/111+37562630..37564055Acidic endochitinase precursor, putative, expressed
LOC_Os01g64110Os.170.1.S1_at11/111+37566432..37567624Hevamine A precursor, putative, expressed
LOC_Os01g64120Os.170.3.S1_at10/111+37568006..37568936Ferredoxin-2, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46862.1.S1_at--766--1317Chr11:23306161..23306184 (24 bp)
AGAGGATGAGGCTCCTGTTCCCCGT
LOC_Os11g39950
Os.46862.1.S1_at--824--7932Chr12:16942963..16942987 (25 bp)
GGATTAGACTGACGGACTCCTTGCA
NONE
Os.46862.1.S1_at--374--107320Chr12:16942983..16943007 (25 bp)
TTGCAGCTTCGATCTCGTATCAGAT
NONE
Os.46862.1.S1_at--623--85721Chr12:16943014..16943035 (22 bp)
TGGATAGTATGCGAGACACCCCTTC
NONE
Os.46862.1.S1_at--1057--42921Chr12:16943035..16943059 (25 bp)
CCTTCCCTTACCTAGATTGACGAGT
NONE
Os.46862.1.S1_at--811--102510Chr12:16943074..16943098 (25 bp)
TTTGATGTATCGTTTGGATGAACCT
NONE
Os.46862.1.S1_at--416--89932Chr12:16943092..16943116 (25 bp)
TGAACCTTATTTGGACTGCGTATGT
NONE
Os.46862.1.S1_at--1156--4639Chr12:16943109..16943133 (25 bp)
GCGTATGTATGCAGTCAATTGCATC
NONE
Os.46862.1.S1_at--911--31523Chr12:16943125..16943149 (25 bp)
AATTGCATCATGATTTATGTACCAT
NONE
Os.46862.1.S1_at--102--7520Chr12:16943141..16943165 (25 bp)
ATGTACCATTTGTGAAACTCTGTGA
NONE
Os.46862.1.S1_at--87--7311Chr12:16943174..16943198 (25 bp)
ATGATATCTATTGTTGTTGTGTTGT
NONE
Target Sequence 
AGAGGATGAGGCTCCTGTTCCCCGTATCACCTTCCTCGGAGGCCCTCGCACCCTCAGCACTGCTCGCAAGAGCACACGAC
CCCCGGGCAAGAGGCCCAAGCCAGATCCAGAGGCCACTACCTCTGAGCCGTGGGGACTCCGGTTTGCGCGAGCCAGCGAC
CACCCTCTACCTGCCCCGGGATCCTGCGGATGGCTGGAGGATTAGACTGACGGACTCCTTGCAGCTTCGATCTCGTATCA
GATGGTTTTTGGATAGTATGCGAGACACCCCTTCCCTTACCTAGATTGACGAGTAGTTTGATGATTGGTTTGATGTATCG
TTTGGATGAACCTTATTTGGACTGCGTATGTATGCAGTCAATTGCATCATGATTTATGTACCATTTGTGAAACTCTGTGA
TGTTATTTATGATATCTATTGTTGTTGTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46862.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis