Browse Element(s) Details


Os.46869.1.A1_at

Description gb:AK106667.1
DB_XREF= gi:32991876
TID=Os.46869.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46869 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine carboxypeptidase (OSJNBa0046L02.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-H08, full insert sequence.
FL= gb:AK106667.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0111011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01150OsAffx.449.1.A1_at11/1110+101923..102590hypothetical protein
LOC_Os10g01150OsAffx.449.1.A1_x_at11/1110+101923..102590hypothetical protein
LOC_Os10g01164OsAffx.448.1.S1_x_at6/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.448.1.S1_at3/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.8127.1.S1_at1/1110+104817..107217retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46869.1.A1_at--1114--8211Chr10:84996..85020 (25 bp)
GGCAATCCTCTTTGACGATGGTGCA
LOC_Os10g01110
Os.46869.1.A1_at--653--10371Chr10:84892..84916 (25 bp)
TTTTTTCCCCATCACGGTTGAATGC
LOC_Os10g01110
Os.46869.1.A1_at--1033--9071Chr10:84870..84894 (25 bp)
TGCTTTTCTCTTGGGTTGCGGCGGA
LOC_Os10g01110
Os.46869.1.A1_at--308--4691Chr10:84850..84874 (25 bp)
GCGGAGACTATACTCGCGCGTGTAT
LOC_Os10g01110
Os.46869.1.A1_at--1108--1991Chr10:84839..84863 (25 bp)
ACTCGCGCGTGTATTATATATGTCT
LOC_Os10g01110
Os.46869.1.A1_at--128--271Chr10:84822..84846 (25 bp)
ATATGTCTGTTTCTTCACGAAGTGC
LOC_Os10g01110
Os.46869.1.A1_at--607--5351Chr10:84795..84819 (25 bp)
GAAGATTTGTCCCATGTGTAAGATC
LOC_Os10g01110
Os.46869.1.A1_at--44--1371Chr10:84720..84744 (25 bp)
AGAGCATACTCCTACACGTCAATGT
LOC_Os10g01110
Os.46869.1.A1_at--1078--7031Chr10:84685..84709 (25 bp)
GTAACATTTTATTACGCCGTCAGTG
LOC_Os10g01110
Os.46869.1.A1_at--1049--3351Chr10:84653..84677 (25 bp)
CAGTTTTGTACACCGGAAATCCAAT
LOC_Os10g01110
Os.46869.1.A1_at--547--7431Chr10:84628..84652 (25 bp)
GTGTTTTACGATATCATTCTCTGAA
LOC_Os10g01110
Target Sequence 
GGCAATCCTCTTTGACGATGGTGCATATATGTGTAAGAGAAAATTCCAGGATGGAGATATTACATCACAAGAAATTTATG
ATTTTGCTAAAATTGTGGCGACATTTTTTTCCCCATCACGGTTGAATGCTTTTCTCTTGGGTTGCGGCGGAGACTATACT
CGCGCGTGTATTATATATGTCTGTTTCTTCACGAAGTGCATGAAGATTTGTCCCATGTGTAAGATCTGGAGAGTGAGAAC
AAAACATGGTTCAATACAGTGCAAATGATGGATCGAAGAGCATACTCCTACACGTCAATGTAAATAGACATGTAACATTT
TATTACGCCGTCAGTGTGGCCCCCAGTTTTGTACACCGGAAATCCAATGTGTTTTACGATATCATTCTCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46869.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis