Browse Element(s) Details


Os.46896.1.S1_at

Description gb:AK103222.1
DB_XREF= gi:32988431
TID=Os.46896.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cytochrome c-type biogenesis protein (OSJNBa0001O14.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123A02, full insert sequence.
FL= gb:AK103222.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3987010/11cytochrome c biogenesis protein CcmE family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g39810Os.3082.1.S1_at10/1110+20978768..20981722Sterol desaturase family protein, expressed
LOC_Os10g39820Os.3085.1.S1_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.47632.1.S1_s_at11/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39820Os.15864.1.S1_s_at1/1110+20981898..20985726Zinc knuckle family protein, expressed
LOC_Os10g39830OsAffx.18584.1.S1_at10/1110+20986666..20989668expressed protein
LOC_Os10g39840Os.46631.1.S1_x_at10/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39840OsAffx.16482.1.S1_x_at1/1110+20990504..20992314Glycosyl hydrolases family 16 protein, expressed
LOC_Os10g39850Os.23245.1.A1_at10/1110+20993103..20997685Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g39860Os.32501.1.S1_a_at11/1110+20998536..21000958rhodanese, putative, expressed
LOC_Os10g39870Os.46896.1.S1_at10/1110+21001807..21002970cytochrome c biogenesis protein CcmE family, putative, expressed
LOC_Os10g39880Os.46404.1.S1_x_at7/1110+21004969..21006142Photosystem Q, putative
LOC_Os10g39890OsAffx.20155.1.S1_at10/1110+21008624..21009742Pollen proteins Ole e I family protein
LOC_Os10g39900Os.22919.1.S1_at11/1110+21011214..21018389expressed protein
LOC_Os10g39910Os.26378.1.A1_at11/1110+21020287..21029467expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0017004biological_processcytochrome complex assembly
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46896.1.S1_at--284--2231Chr10:21002517..21002541 (25 bp)
ACAAGGCCCGGGACTGCGAGTGCTT
LOC_Os10g39870
Os.46896.1.S1_at--513--6111Chr10:21002534..21002558 (25 bp)
GAGTGCTTCTTCAGCGCCACCGAGG
LOC_Os10g39870
Os.46896.1.S1_at--336--4091Chr10:21002572..21002596 (25 bp)
CGACGAGAAGTACATGCCCAAGGAG
LOC_Os10g39870
Os.46896.1.S1_at--646--4771Chr10:21002657..21002681 (25 bp)
GCTGCCTCTCAAGAGTCGGCGACGG
LOC_Os10g39870
Os.46896.1.S1_at--213--4391Chr10:21002702..21002726 (25 bp)
GCCAAGTCGAGCTCATAAGGTTTTG
LOC_Os10g39870
Os.46896.1.S1_at--990--9771Chr10:21002717..21002741 (25 bp)
TAAGGTTTTGTTTGCATTCTGCTTT
LOC_Os10g39870
Os.46896.1.S1_at--1160--9531Chr10:21002747..21002771 (25 bp)
TCTAGATCTTAAGTGCGTATTCGCT
LOC_Os10g39870
Os.46896.1.S1_at--870--4631Chr10:21002761..21002785 (25 bp)
GCGTATTCGCTGAGGCACAGATAGA
LOC_Os10g39870
Os.46896.1.S1_at--480--3151Chr10:21002845..21002869 (25 bp)
AATTCTAGTAGTACCATGAGCCAGG
LOC_Os10g39870
Os.46896.1.S1_at--496--5751Chr10:21002907..21002931 (25 bp)
GACGGTTGAACACGATTATACTTAT
LOC_Os10g39870
Os.46896.1.S1_at--1060--1191NONE
AGTATTTGGTATACTCCTTCCACCG
NONE
Target Sequence 
ACAAGGCCCGGGACTGCGAGTGCTTCTTCAGCGCCACCGAGGTGCTCGCCAAGCACGACGAGAAGTACATGCCCAAGGAG
GTCGGCGAGGCGCTCGAGCGCAACAAGAAGAAGCTCGAGGAGGAGGCCGCCGCCGCCGCCGCTGCCTCTCAAGAGTCGGC
GACGGCCGCGGTTGCTTTGGATGGAGCCAAGTCGAGCTCATAAGGTTTTGTTTGCATTCTGCTTTTAAGATCTAGATCTT
AAGTGCGTATTCGCTGAGGCACAGATAGATTTGATTGCCCAAATGGATTTTTGGGATTTCAGATGAGTGATTCAATTGGA
TCTGTTGTAATTCTAGTAGTACCATGAGCCAGGGGGCAAACGAAATTTTGCTAGGGAATAACGACTGAGTGACGGTTGAA
CACGATTATACTTATTCTTTTTAAGCAATAGTATTTGGTATACTCCTTCCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis