Browse Element(s) Details


Os.47343.2.S1_x_at

Description gb:AK068397.1
DB_XREF= gi:32978415
TID=Os.47343.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151F12, full insert sequence.
FL= gb:AK068397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3974011/11ACT domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39680Os.17754.1.S1_at11/119+22766856..22771134Major Facilitator Superfamily protein, expressed
LOC_Os09g39690Os.35018.1.S1_at11/119+22774478..22777104Neuralized protein, putative, expressed
LOC_Os09g39700Os.54357.1.S1_at11/119+22778282..22783254expressed protein
LOC_Os09g39700OsAffx.30214.1.S1_x_at11/119+22778282..22783254expressed protein
LOC_Os09g39700Os.6094.1.S1_at1/119+22778282..22783254expressed protein
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed
LOC_Os09g39780Os.5492.1.S1_at11/119+22809423..22810520Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790Os.53317.1.S1_x_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39790Os.53317.2.S1_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39800OsAffx.30216.1.S1_at11/119+22817548..22817970hypothetical protein
LOC_Os09g39810OsAffx.6536.1.S1_at11/119+22821100..22821495Ethylene-responsive transcription factor 14, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.47343.2.S1_x_at--40--1311Chr09:22793423..22793447 (25 bp)
AGAGGCCCTGACACGGAACTGCTGG
LOC_Os09g39740
Os.47343.2.S1_x_at--826--2551Chr09:22793407..22793431 (25 bp)
AACTGCTGGTGGCTAACCCAGTGGA
LOC_Os09g39740
Os.47343.2.S1_x_at--380--9571Chr09:22793209..22793335 (25 bp)
TCTTCTTGGCTGAGATTGGTCGGCA
LOC_Os09g39740
Os.47343.2.S1_x_at--1088--6231Chr09:22793102..22793126 (25 bp)
GATGGAGTCACCAACATGCTCATGG
LOC_Os09g39740
Os.47343.2.S1_x_at--196--631Chr09:22793087..22793111 (25 bp)
ATGCTCATGGGCTGGGACGACACTC
LOC_Os09g39740
Os.47343.2.S1_x_at--78--1891Chr09:22793010..22793034 (25 bp)
ACGTCCTTTGCCTTGTACATAGTTG
LOC_Os09g39740
Os.47343.2.S1_x_at--783--10831Chr09:22792968..22792992 (25 bp)
TTGTGTGCCTTGTTAAGTCGTTCGT
LOC_Os09g39740
Os.47343.2.S1_x_at--216--7171Chr09:22792888..22792912 (25 bp)
GTCTGTTTAGTTAGGGAGCACTCCC
LOC_Os09g39740
Os.47343.2.S1_x_at--335--8031Chr09:22792811..22792835 (25 bp)
GGAAATGCTTACTCCTAATTACTAA
LOC_Os09g39740
Os.47343.2.S1_x_at--13--10071Chr09:22792768..22792792 (25 bp)
TAGTAAGCAAGCCAGTGAACCAATT
LOC_Os09g39740
Os.47343.2.S1_x_at--396--4951Chr09:22792739..22792763 (25 bp)
GCATTCATTCAATAGCCTTGTTGGC
LOC_Os09g39740
Target Sequence
AGAGGCCCTGACACGGAACTGCTGGTGGCTAACCCAGTGGAGGTNTCGGGCAAGGGTAGACCGCTGGTGTTCTACGACAT
CACCCTNGCTCTCAAGAAGCTTCACNAACGGATCTTCTTGGCTGAGATTGGTCGGCATGTGGTGGGTGATAGGGAATGGG
AGGTTTACAGGGTGCACCTTGGTGAGGGAGANCATTCTTCATTGCGGAGCAAGATTGTTGATGGAGTCACCAACATGCTC
ATGGGCTGGGACGACACTCCTCCATCCTAATCCTACTAGTAGTAGTTCTAGTTAGTTTTTTTNATGGAACACACGTCCTT
TGCCTTGTACATAGTTGGTAGTGGCTGCTGTAAATTGTGTGCCTTGTTAAGTCGTTCGTGGTAGAATGCGTTGGCAGTAG
CTAGCTTTGACTAATCAATCAGCAGCTAATTTCAGTCTGTTTAGTTAGGGAGCACTCCCCTCTAGTTGTATCACTATCAA
AACTGAATAGTGCTCAAGTTATCTAACAGGAGGAAATGCTTACTCCTAATTACTAAAGTGGTAGTAAGCAAGCCAGTGAA
CCAATTGAATGCATTCATTCAATAGCCTTGTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47343.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis