Browse Element(s) Details


Os.4775.2.S1_at

Description gb:X60820.1
DB_XREF= gi:20264
TID=Os.4775.2
CNT=26
FEA=mRNA
TIER=Stack
STK=13
UG=Os.4775 (NCBI UniGene Cluster)
DEF=O.sativa mRNA for 16.9 kD low molecular weight heat shock protein.
PROD=16.9 KD low molecular weight heat shock protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0437011/1116.9 kDa class I heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04320OsAffx.10903.2.S1_at11/111+1922127..1923305transposon protein, putative, unclassified
LOC_Os01g04330Os.36767.1.S1_at11/111+1927818..1928706EF hand family protein, expressed
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04350Os.14405.1.S1_at11/111+1937814..1938713Hsp20/alpha crystallin family protein, expressed
LOC_Os01g04360OsAffx.10905.3.S1_at11/111+1941063..194181316.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04370Os.4775.2.S1_at11/111+1945553..194638916.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4775.2.S1_at--654--10771Chr01:1945799..1945823 (25 bp)
TTGAGATCTCCGGTTAAGCTCCTGA
LOC_Os01g04370
Os.4775.2.S1_at--555--6411Chr01:1945795..1945819 (25 bp)
GATCTCCGGTTAAGCTCCTGAAGAT
LOC_Os01g04370
Os.4775.2.S1_at--471--9611Chr01:1945750..1945774 (25 bp)
TCATGTTTGGTGTCAGTAATTCAGT
LOC_Os01g04370
Os.4775.2.S1_at--783--7111Chr01:1945739..1945763 (25 bp)
GTCAGTAATTCAGTATTTCAGTGTG
LOC_Os01g04370
Os.4775.2.S1_at--522--10331Chr01:1945724..1945748 (25 bp)
TTTCAGTGTGTGTTTGTTTGGTCGT
LOC_Os01g04370
Os.4775.2.S1_at--241--7811Chr01:1945705..1945729 (25 bp)
GGTCGTGCAAGTATGGTCTGCTGCT
LOC_Os01g04370
Os.4775.2.S1_at--23--831Chr01:1945693..1945717 (25 bp)
ATGGTCTGCTGCTGGTGTGTCGTAC
LOC_Os01g04370
Os.4775.2.S1_at--874--8871Chr01:1945648..1945672 (25 bp)
TGAGTCGGCCGGTTTCATGTATTCC
LOC_Os01g04370
Os.4775.2.S1_at--389--9631Chr01:1945634..1945658 (25 bp)
TCATGTATTCCTTTGTGAGTACTTG
LOC_Os01g04370
Os.4775.2.S1_at--394--7071Chr01:1945608..1945632 (25 bp)
GTAATCGCCTTCTTAGTTCTTGCTC
LOC_Os01g04370
Os.4775.2.S1_at--840--3651Chr01:1945600..1945624 (25 bp)
CTTCTTAGTTCTTGCTCGTTGAGGA
LOC_Os01g04370
Target Sequence 
TTGAGATCTCCGGTTAAGCTCCTGAAGATGTGATCGGTGAGGGAAGAAGTCATGTTTGGTGTCAGTAATTCAGTATTTCA
GTGTGTGTTTGTTTGGTCGTGCAAGTATGGTCTGCTGCTGGTGTGTCGTACNCGTTGGGAGTCCGAGTGGCTGAGTCGGC
CGGTTTCATGTATTCCTTTGTGAGTACTTGNGTAATCGCCTTCTTAGTTCTTGCTCGTTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4775.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis