Browse Element(s) Details

Os.47883.1.S1_at

Description

gb:AK110938.1
DB_XREF= gi:32996147
TID=Os.47883.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47883 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-G07, full insert sequence.
FL= gb:AK110938.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g23504	10/11	DTW domain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g23430	Os.1315.1.S1_at	11/11	6	+	13676509..13680874	Signal recognition particle 19 kDa protein, putative, expressed
LOC_Os06g23440	Os.4711.1.S1_at	11/11	6	+	13684423..13685178	Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23440	Os.57496.1.S1_x_at	11/11	6	+	13684423..13685178	Eukaryotic translation initiation factor 1A, putative, expressed
LOC_Os06g23450	OsAffx.4916.1.S1_at	10/11	6	+	13686769..13687747	retrotransposon protein, putative, unclassified
LOC_Os06g23460	OsAffx.27788.1.S1_at	11/11	6	+	13689562..13696927	KH domain containing protein, expressed
LOC_Os06g23470	NA	NA	6	+	13698713..13699326	hypothetical protein
LOC_Os06g23480	NA	NA	6	+	13700073..13700447	hypothetical protein
LOC_Os06g23504	OsAffx.15579.1.S1_at	11/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.15580.1.S1_at	11/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	Os.47883.1.S1_at	10/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.4917.1.S1_at	10/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.26924.1.S1_x_at	1/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	Os.51220.1.S1_at	1/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23504	OsAffx.32296.1.A1_at	1/11	6	+	13703984..13721910	DTW domain-containing protein, putative, expressed
LOC_Os06g23530	Os.6639.1.S1_at	11/11	6	+	13722596..13726110	Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os06g23540	OsAffx.27789.4.S1_at	10/11	6	+	13737448..13738457	hypothetical protein
LOC_Os06g23549	OsAffx.27789.1.S1_at	1/11	6	+	13740256..13740974	NA
LOC_Os06g23560	Os.54198.1.S1_at	11/11	6	+	13742330..13744244	UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.47883.1.S1_at--807--169	1	Chr06:13721518..13721542 (25 bp)	AGCCAGCGTGGGATCGTACGTGCAC	LOC_Os06g23504
Os.47883.1.S1_at--468--391	1	Chr06:13721557..13721581 (25 bp)	CTGGCCTCCTCTGGGAATTGGATAT	LOC_Os06g23504
Os.47883.1.S1_at--504--3	1	Chr06:13721573..13721597 (25 bp)	ATTGGATATGCGGTCCGAGCTCGGT	LOC_Os06g23504
Os.47883.1.S1_at--1145--377	1	Chr06:13721592..13721616 (25 bp)	CTCGGTGCCTTTGAGCTGGGAAAGC	LOC_Os06g23504
Os.47883.1.S1_at--855--1071	1	Chr06:13721649..13721673 (25 bp)	TTGCTTGATGCTCTCACGGCACGAC	LOC_Os06g23504
Os.47883.1.S1_at--261--829	1	Chr06:13721674..13721698 (25 bp)	GGCTTCGCCTGGGACGATCTATAAC	LOC_Os06g23504
Os.47883.1.S1_at--596--59	1	Chr06:13721737..13721761 (25 bp)	ATGCCTGGAAGCCTGGGTTCATTTT	LOC_Os06g23504
Os.47883.1.S1_at--705--235	1	Chr06:13721793..13721817 (25 bp)	AAAGCGTATTCCTTCACTCTTTTGA	LOC_Os06g23504
Os.47883.1.S1_at--791--1039	1	Chr06:13721812..13721836 (25 bp)	TTTTGAGGTCACTAGCAACTGCTGA	LOC_Os06g23504
Os.47883.1.S1_at--370--1011	1	Chr06:13721839..13721863 (25 bp)	TATGGAAAACATTCCTTTTGGCGGG	LOC_Os06g23504
Os.47883.1.S1_at--110--527	1	Chr06:13721967..13721991 (25 bp)	GAATGCCTAAGTTTTCAGCTGTGAT	NONE

Target Sequence

AGCCAGCGTGGGATCGTACGTGCACCGCAGCAGCAGCTTCTGGCCTCCTCTGGGAATTGGATATGCGGTCCGAGCTCGGT
GCCTTTGAGCTGGGAAAGCAGGCTGAAGCTGTGGAGTGTTCANTGGATGTCTTGCTTGATGCTCTCACGGCACGACGGCT
TCGCCTGGGACGATCTATAACCCGAAAACAGAGGCATAATAGGAACTGCATATAGTTGCATGCCTGGAAGCCTGGGTTCA
TTTTTTTGCAGAATAGGAAAGCTGATTAGATAGTTAAAGCGTATTCCTTCACTCTTTTGAGGTCACTAGCAACTGCTGAA
ATATGGAAAACATTCCTTTTGGCGGGAAATTAATATGGAGAAATCTTTTCAGCTGTGATGTTAGCAAAAAACTGAAACAG
CATATTCAAAGGTTGNAAAACATTTCTTTTNGGCNAGGAAATTAATNCTGGAGAATGCCTAAGTTTTCAGCTGTGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis