Browse Element(s) Details


Os.47921.1.A1_at

Description gb:AK102014.1
DB_XREF= gi:32987223
TID=Os.47921.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47921 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080D22, full insert sequence.
FL= gb:AK102014.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3905011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38990Os.27039.1.S1_at11/118+24513037..24516989WRKY DNA binding domain containing protein, expressed
LOC_Os08g39000OsAffx.6079.1.S1_at11/118+24524268..24525428expressed protein
LOC_Os08g39010OsAffx.17414.1.S1_at11/118+24526948..24527899hypothetical protein
LOC_Os08g39010Os.21836.1.S1_at1/118+24526948..24527899hypothetical protein
LOC_Os08g39020NANA8+24531947..24532315expressed protein
LOC_Os08g39030Os.49880.2.S1_at11/118+24532990..24535594expressed protein
LOC_Os08g39030Os.49880.2.S1_x_at10/118+24532990..24535594expressed protein
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47921.1.A1_at--758--10771Chr08:24541580..24541604 (25 bp)
TTGATTTGGCATTCAGGCTGTGCAA
LOC_Os08g39050
Os.47921.1.A1_at--1059--2551Chr08:24541621..24541645 (25 bp)
AACTGGTTTCCAAGTGTTGATACTA
LOC_Os08g39050
Os.47921.1.A1_at--298--10491Chr08:24541646..24541670 (25 bp)
TTAACCAACTGCTAAAAGGCCTCAT
LOC_Os08g39050
Os.47921.1.A1_at--563--8131Chr08:24541764..24541788 (25 bp)
GGACATATTGTCTCTTGGGAACACC
LOC_Os08g39050
Os.47921.1.A1_at--1153--5191Chr08:24541821..24541845 (25 bp)
GAATTTTTTGCTGTATGTCCACCAC
LOC_Os08g39050
Os.47921.1.A1_at--58--9831Chr08:24542761..24542785 (25 bp)
TAACACTTGGTTGGCACTCATTTTA
LOC_Os08g39050
Os.47921.1.A1_at--616--6791Chr08:24542873..24542897 (25 bp)
GTTATTCAAGCAGCATTGTTCTCAG
LOC_Os08g39050
Os.47921.1.A1_at--242--5011Chr08:24543288..24543312 (25 bp)
GCAGGCATTTTGTTGACAGTTCCAT
LOC_Os08g39050
Os.47921.1.A1_at--114--3591Chr08:24543310..24543334 (25 bp)
CATTTGTTCTGTTGGCTTGGAGCAC
LOC_Os08g39050
Os.47921.1.A1_at--681--2251Chr08:24543376..24543400 (25 bp)
AAATTTTTCTCGGATTGGTGGCAGA
LOC_Os08g39050
Os.47921.1.A1_at--797--6971Chr08:24543411..24543435 (25 bp)
GTACCTCAACGTTTTGTAGCATGTA
LOC_Os08g39050
Target Sequence 
TTGATTTGGCATTCAGGCTGTGCAAAGACAGCATGGAGAAAAACTGGTTTCCAAGTGTTGATACTATTAACCAACTGCTA
AAAGGCCTCATATCAATTTCAAAGGACAGGAATGCAAGAGAGATAATGAAATTGGTAATAGGAAGAAAACCTTCCTATTC
AAATGATGAAGTGAAAACCTTCCAGGACATATTGTCTCTTGGGAACACCAGAAGATAATTTGAGTATTTGACTGCTGGAT
GGAATTTTTTGCTGTATGTCCACCACATGTAATTTTAACACTTGGTTGGCACTCATTTTATGCCTGACTGAATGGGAGAA
CAGTGAGGAAATAATGTTGGGAATACAGGACAGCGGAAACTATGGGGAATGAAATTTTGGACTTGTGGTTATTCAAGCAG
CATTGTTCTCAGAATCAATTGATGACACAAGGCAGGCATTTTGTTGACAGTTCCATTTGTTCTGTTGGCTTGGAGCACTG
AAGGGAAAAAAAAAACGTATAGATCAATCTCCGGGAAGTAAATTTTTCTCGGATTGGTGGCAGATAAACATTTTGTACCT
CAACGTTTTGTAGCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47921.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis