Browse Element(s) Details


Os.47949.1.S1_a_at

Description gb:AK068520.1
DB_XREF= gi:32978538
TID=Os.47949.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013155I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155I19, full insert sequence.
FL= gb:AK068520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5147011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51400OsAffx.15194.1.S1_at11/115+29397661..29401826serine/threonine protein kinase, putative
LOC_Os05g51420Os.9473.2.S1_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.1.S1_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_a_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51420Os.9473.2.S2_at11/115+29403457..29408904hypersensitive-induced response protein, putative, expressed
LOC_Os05g51410OsAffx.15195.1.S1_at11/115+29405111..29409102expressed protein
LOC_Os05g51430OsAffx.15196.1.S1_at11/115+29409666..29410202hypothetical protein
LOC_Os05g51440OsAffx.15197.1.S1_at11/115+29411340..29412432Hsp20/alpha crystallin family protein
LOC_Os05g51450Os.12065.1.S1_at11/115+29412546..29416205ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os05g51460OsAffx.3605.1.S1_at1/115+29419310..29420718retrotransposon protein, putative, LINE subclass
LOC_Os05g51470Os.47949.1.S1_a_at11/115+29423748..29426700expressed protein
LOC_Os05g51480Os.419.1.S1_at11/115+29428627..29436780DNA damage binding protein 1a, putative, expressed
LOC_Os05g51490Os.22562.1.S1_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51490OsAffx.27405.1.S1_x_at11/115+29436925..29444190SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os05g51500Os.12337.2.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.56152.1.S1_x_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500Os.12337.1.S1_at11/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed
LOC_Os05g51500OsAffx.29835.1.S1_x_at1/115+29445291..29451410Elongation factor Tu GTP binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001887biological_processselenium metabolism
GO:0006790biological_processsulfur metabolism
GO:0018283biological_processiron incorporation into metallo-sulfur cluster
GO:0009507cellular_componentchloroplast
GO:0009000molecular_functionselenocysteine lyase activity
GO:0031071molecular_functioncysteine desulfurase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47949.1.S1_a_at--1133--151Chr05:29426206..29426230 (25 bp)
ATTTTGTGGCAACACCTGCAACCAT
LOC_Os05g51470
Os.47949.1.S1_a_at--564--191Chr05:29426229..29426253 (25 bp)
ATTTCCGCCGAAGAATGGTCCTCCT
LOC_Os05g51470
Os.47949.1.S1_a_at--1065--7251Chr05:29426246..29426270 (25 bp)
GTCCTCCTCTAGCTTGCTGTAGATA
LOC_Os05g51470
Os.47949.1.S1_a_at--1116--4711Chr05:29426261..29426285 (25 bp)
GCTGTAGATACCTGTAACTGCAAAG
LOC_Os05g51470
Os.47949.1.S1_a_at--124--6271Chr05:29426308..29426332 (25 bp)
GATGTGGCCACTAAGCTCAGACTAG
LOC_Os05g51470
Os.47949.1.S1_a_at--1038--5751Chr05:29426352..29426376 (25 bp)
GACGTTACATTTGTTTGGCTTCTTA
LOC_Os05g51470
Os.47949.1.S1_a_at--355--2011Chr05:29426418..29426442 (25 bp)
ACTCTGTTCCTCATATGTTATCCTC
LOC_Os05g51470
Os.47949.1.S1_a_at--783--6811Chr05:29426492..29426516 (25 bp)
GTTTTTGGGCCATGATCATCTTTTT
LOC_Os05g51470
Os.47949.1.S1_a_at--2--10271Chr05:29426516..29426540 (25 bp)
TTTGTTTCCCTGTAGAACTGTATGC
LOC_Os05g51470
Os.47949.1.S1_a_at--490--131Chr05:29426571..29426595 (25 bp)
ATTCAGAGTGTGGTTTGCTTGGTTT
LOC_Os05g51470
Os.47949.1.S1_a_at--254--10671Chr05:29426613..29426637 (25 bp)
TTCCTTTTTGCCTCTTACTGTAGTA
LOC_Os05g51470
Target Sequence 
ATTTTGTGGCAACACCTGCAACCATTTCCGCCGAAGAATGGTCCTCCTCTAGCTTGCTGTAGATACCTGTAACTGCAAAG
ACAGGCAGATGGTACAAGGGAAGATGTGGCCACTAAGCTCAGACTAGCAAACTCTTGAGTGACACAGACGTTACATTTGT
TTGGCTTCTTATTTTGGTCAGGGTTGAAACAATCTCTTGTGATTTTCAGATAACTCTGTTCCTCATATGTTATCCTCGNC
TGNCAGTGCAAAATTGGGATTGGGTGATACAGTGAACAAGTGTTTTGTTTTTGGGCCATGATCATCTTTTTTTGTTTCCC
TGTAGAACTGTATGCAGGCGTTTTTTGAAAGTGNTCATGTACCGAATTCAGAGTGTGGTTTGCTTGGTTTGTTGAACAGG
GANGCTATTCCTTTTTGCCTCTTACTGTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47949.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis