Browse Element(s) Details


Os.48238.1.S1_x_at

Description gb:AK064308.1
DB_XREF= gi:32974326
TID=Os.48238.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48238 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-B10, full insert sequence.
FL= gb:AK064308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g445309/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44484Os.53782.1.S1_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484OsAffx.25537.1.S1_x_at11/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44484Os.25542.1.S1_at10/113+24987908..24996309DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed
LOC_Os03g44500Os.40410.1.A1_s_at11/113+24996520..25005272kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os03g44510NANA3+25007771..25011029transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g44520Os.53631.1.S1_at11/113+25015671..25016551expressed protein
LOC_Os03g44530Os.54360.1.S1_at11/113+25017367..25020869expressed protein
LOC_Os03g44530Os.48238.1.S1_x_at9/113+25017367..25020869expressed protein
LOC_Os03g44540Os.54660.1.S1_at11/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_x_at2/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44540OsAffx.31294.1.S1_at1/113+25023300..25028891CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os03g44544NANA3+25028842..25030099hypothetical protein
LOC_Os03g44550OsAffx.18103.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_x_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.20848.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.19857.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g44550OsAffx.15708.1.S1_at1/113+25035772..25037309retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48238.1.S1_x_at--364--5251Chr03:25017719..25017743 (25 bp)
GAATCTTTCGACCTGGCCAGTGAAG
LOC_Os03g44530
Os.48238.1.S1_x_at--822--4411Chr03:25017704..25017728 (25 bp)
GCCAGTGAAGTGTCCAAGAACTCTA
LOC_Os03g44530
Os.48238.1.S1_x_at--55--1331Chr03:25017666..25017690 (25 bp)
AGAGGCATCCTATAAGCATCACAAG
LOC_Os03g44530
Os.48238.1.S1_x_at--824--8391Chr03:25017596..25017620 (25 bp)
GGCGCTGATGGATCTGCTGTTGTTC
LOC_Os03g44530
Os.48238.1.S1_x_at--790--4731Chr03:25017581..25017605 (25 bp)
GCTGTTGTTCGGGTGTTCCAGAAAC
LOC_Os03g44530
Os.48238.1.S1_x_at--530--10651Chr03:25017566..25017590 (25 bp)
TTCCAGAAACCTGCCGTCAATTTTG
LOC_Os03g44530
Os.48238.1.S1_x_at--212--4191Chr03:25017553..25017577 (25 bp)
CCGTCAATTTTGCTACCGTTACAGG
LOC_Os03g44530
Os.48238.1.S1_x_at--179--4311Chr03:25017503..25017527 (25 bp)
GCGACTTCATTCTCTTTTTTAGCTT
LOC_Os03g44530
Os.48238.1.S1_x_at--401--7851Chr03:25017371..25017395 (25 bp)
GGTACGCAATGTGGCTATTTTTCGA
LOC_Os03g44530
Os.48238.1.S1_x_at--291--10211Chr03:25017356..25017380 (25 bp)
TATTTTTCGATGCTAGCTTTCATAG
NONE
Os.48238.1.S1_x_at--911--8951NONE
TGAAACCTTATGAATGTTCCATTAG
NONE
Target Sequence 
GAATCTTTCGACCTGGCCAGTGAAGTGTCCAAGAACTCTACAAAGAAGAAGAAAGAGGCATCCTATAAGCATCACAAGAA
ACCCCAGAGGAAGAAGGATCGTTCATGGAGGGTTGGAANTGATGGCGCTGATGGATCTGCTGTTGTTCGGGTGTTCCAGA
AACCTGCCGTCAATTTTGCTACCGTTACAGGTTAATGTTTTTTTGCGGCACTCTGTGCGACTTCATTCTCTTTTTTAGCT
TACGGTAATTGAAGATGTCGTTGAAAGTCAAACTACATTTTATCCATTTTGTTTCATCNTCTGNTGNTTGTTATGGNCAT
CTGTAATTCTGTATNGGAAATNTGGAATGGTACGCAATGTGGCTATTTTTCGATGCTAGCTTTCATAGCATTTGACTGAA
AGGATGAAACCTTATGAATGTTCCATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48238.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis