Browse Element(s) Details


Os.49266.1.A1_at

Description gb:AK108496.1
DB_XREF= gi:32993705
TID=Os.49266.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49266 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G10, full insert sequence.
FL= gb:AK108496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4548011/11stress-induced protein sti1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45440Os.9332.2.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.4.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440Os.9332.2.S1_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45440OsAffx.22848.3.S1_x_at1/114+26665222..26673981retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g45450OsAffx.26473.1.S1_at7/114+26677902..26678440hypothetical protein
LOC_Os04g45460OsAffx.14276.1.S1_at11/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45460Os.49436.1.S1_x_at10/114+26681859..26685600receptor-like protein kinase, putative, expressed
LOC_Os04g45470Os.47710.2.A1_s_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.27527.1.S1_at11/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45470Os.47710.1.A1_at9/114+26684818..26689595Vacuolar processing enzyme, beta-isozyme precursor, putative, expressed
LOC_Os04g45480Os.49266.1.A1_at11/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45480Os.16317.1.S1_at9/114+26694237..26701555stress-induced protein sti1, putative, expressed
LOC_Os04g45490Os.7994.1.S1_at11/114+26698804..26701555Elongation factor G, chloroplast precursor, putative, expressed
LOC_Os04g45500OsAffx.14277.1.S1_at11/114+26704183..26704923hypothetical protein
LOC_Os04g45510OsAffx.30150.1.S1_at3/114+26706912..26707253hypothetical protein
LOC_Os04g45520Os.55511.1.S1_at11/114+26712380..26713541Integral membrane protein, expressed
LOC_Os04g45530OsAffx.4098.1.S1_at11/114+26718949..26719543hypothetical protein
LOC_Os04g45540NANA4+26721433..26727660retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49266.1.A1_at--353--1951Chr04:26699389..26699410 (22 bp)
ACTGGGTTATCACCTCAACTTTCAT
LOC_Os04g45480
Os.49266.1.A1_at--933--3031Chr04:26699445..26699469 (25 bp)
AATCCTTCACGGAATGCACCTCTGG
LOC_Os04g45480
Os.49266.1.A1_at--502--8191Chr04:26699479..26699503 (25 bp)
GGAATGCCAGGACACTTGAATCAAC
LOC_Os04g45480
Os.49266.1.A1_at--71--4811Chr04:26699532..26699556 (25 bp)
GCTCGGAGGTCCACAACAGGGTAAC
LOC_Os04g45480
Os.49266.1.A1_at--222--2711Chr04:26700304..26700328 (25 bp)
AAGCTTGATTAGTCCGGTTGCCATT
LOC_Os04g45480
Os.49266.1.A1_at--132--1551Chr04:26700334..26700358 (25 bp)
AGCATCAGCTTTGGTCTTTGGTTCA
LOC_Os04g45480
Os.49266.1.A1_at--305--5131Chr04:26700402..26700426 (25 bp)
GCACAACAGGCTTATCTGGGTCACT
LOC_Os04g45480
Os.49266.1.A1_at--576--5171Chr04:26700461..26700485 (25 bp)
GCAAGAGCTACTATGTCACCTGCCA
LOC_Os04g45480
Os.49266.1.A1_at--1016--6791Chr04:26700494..26700518 (25 bp)
GTTATATCTTCCTTACTGTTCGCAT
LOC_Os04g45480
Os.49266.1.A1_at--942--8791Chr04:26700510..26700534 (25 bp)
TGTTCGCATGCATCTCTAGAAGCCT
LOC_Os04g45480
Os.49266.1.A1_at--1068--1471Chr04:26700583..26700607 (25 bp)
AGCAACCAGCTTCCCAGAGTATATG
LOC_Os04g45480
Target Sequence 
ACTGGGTTATCACCTCAACTTTCATTATAGGTTCCAGGAGTCTTGGACCAGCCTTCCTCAATCCTTCACGGAATGCACCT
CTGGCTGCAATTTGGAATGCCAGGACACTTGAATCAACATCATGGTATGAGCCATCAACCAGCACCGCTCGGAGGTCCAC
AACAGGGTAACCAGCAAGGACACCATTGGGCAAGCTTTCCTCAATTCCCTTCATCACGCCTGAGAAGTGGAATGATGGGT
CTTCTTGAGCAAGCTTGATTAGTCCGGTTGCCATTTTGTCAGCATCAGCTTTGGTCTTTGGTTCAATAGCAACTTTAATG
ACAGGATCAGGAAATTCCATGCGTTCAAGCACAACAGGCTTATCTGGGTCACTAAGAGTTTCACCAGTAATTGTATCTTT
GAGACCAGCAAGAGCTACTATGTCACCTGCCACAGCAACTGTTATATCTTCCTTACTGTTCGCATGCATCTCTAGAAGCC
TTCCGATTCTTTCCTTCTTATCTTTGTTTGCATTGAGAACATATGAACCAGCAACCAGCTTCCCAGAGTATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49266.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis