Browse Element(s) Details


Os.49834.1.S1_at

Description gb:AK111836.1
DB_XREF= gi:37988499
TID=Os.49834.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49834 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023139C14, full insert sequence.
FL= gb:AK111836.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1836011/11Ethylene-overproduction protein 1, putative, expressed
LOC_Os01g118201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18310OsAffx.12916.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18310Os.21774.1.S1_at11/113+10237701..102498336-phosphofructo-2-kinase family protein, expressed
LOC_Os03g18320OsAffx.25132.1.S1_at11/113+10250320..10250805hypothetical protein
LOC_Os03g18330NANA3+10253907..10254551hypothetical protein
LOC_Os03g18340OsAffx.12918.1.S1_s_at11/113+10256073..10256840hypothetical protein
LOC_Os03g18350Os.16499.1.S1_at8/113+10258773..10262050Importin-beta N-terminal domain containing protein, expressed
LOC_Os03g18360Os.49834.1.S1_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18360OsAffx.3268.1.S1_x_at11/113+10266932..10270561Ethylene-overproduction protein 1, putative, expressed
LOC_Os03g18370Os.51213.1.S1_at11/113+10271322..10274651ser-thr protein kinase, putative, expressed
LOC_Os03g18380Os.16227.1.S1_at11/113+10278002..10284440Ubiquitin-activating enzyme E1 3, putative, expressed
LOC_Os03g18390OsAffx.25133.1.S1_at11/113+10291300..10292453hypothetical protein
LOC_Os03g18400Os.16408.1.S1_at10/113+10293376..10295855expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49834.1.S1_at--780--7031Chr03:10270035..10270059 (25 bp)
GTAAAATAACCTGTGCACTCGCCAT
LOC_Os03g18360
Os.49834.1.S1_at--1161--7192Chr03:10270083..10270107 (25 bp)
GTCGTCGTCGATTCAGCTGCAGATT
LOC_Os03g18360
Os.49834.1.S1_at--972--6591Chr03:10270135..10270159 (25 bp)
GATTGTTCCTTCGAGAGAGCTGTGA
LOC_Os03g18360
Os.49834.1.S1_at--1010--6871Chr03:10270248..10270272 (25 bp)
GTATTACAGTGCTTACTCCTACTAG
LOC_Os03g18360
Os.49834.1.S1_at--1105--9231Chr03:10270264..10270288 (25 bp)
TCCTACTAGCTTGGAGGCACCGGGA
LOC_Os03g18360
Os.49834.1.S1_at--295--7051Chr03:10270418..10270442 (25 bp)
GGAAGCAACGGTGTCCTTTAATTAG
LOC_Os03g18360
Os.49834.1.S1_at--331--2031Chr03:10270430..10270454 (25 bp)
GTCCTTTAATTAGACCGGGCACATA
LOC_Os03g18360
Os.49834.1.S1_at--86--9311Chr03:10270473..10270497 (25 bp)
TCCCCTTCTTTAATGCCTTTTGATC
LOC_Os03g18360
Os.49834.1.S1_at--329--6411Chr03:10270494..10270518 (25 bp)
GATCTGTATTTGGAGGCACGTTTTC
LOC_Os03g18360
Os.49834.1.S1_at--760--931Chr03:10270507..10270531 (25 bp)
AGGCACGTTTTCTCGTTGCTTAAGC
LOC_Os03g18360
Os.49834.1.S1_at--915--4891Chr03:10270524..10270548 (25 bp)
GCTTAAGCTTTTCCATGATGCATTC
LOC_Os03g18360
Target Sequence 
GTAAAATAACCTGTGCACTCGCCATGCCACCTCATCGTCGCCATCTTCGTCGTCGTCGATTCAGCTGCAGATTTTTTTTT
TCTAGGCAGGATGATGAAACGATTGTTCCTTCGAGAGAGCTGTGAAAGTAACAGATTAACAGAAGCCCCTGCGGATCAGT
GAGGCAGGATCACGAGAAGGTACACAGTACATAACACATGATTACGAGTGTAAGTATTACAGTGCTTACTCCTACTAGCT
TGGAGGCACCGGGAAGACAGAGAGATCCACAGGAGATGAACATGTTGTAAATTATGATAGCGTTGTGTAAATGGCAAAAG
AAAAAAGAAGATTTGTTATGTACATCAAAGATAACAAATCGCTCCAGAAGAGAGAGCTAAAGAGGAAGCAACGGTGTCCT
TTAATTAGACCGGGCACATACTTTTCCCCCTTTTCTTCTCCCCTTCTTTAATGCCTTTTGATCTGTATTTGGAGGCACGT
TTTCTCGTTGCTTAAGCTTTTCCATGATGCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis