Browse Element(s) Details


Os.49913.1.S1_at

Description gb:AK119341.1
DB_XREF= gi:37988964
TID=Os.49913.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49913 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-131-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-D09, full insert sequence.
FL= gb:AK119341.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5638011/11Calcium binding EGF domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g56350OsAffx.12662.1.S1_at11/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56350Os.23305.1.A1_x_at1/112+34486691..34492248hAT family dimerisation domain containing protein
LOC_Os02g56360Os.18659.1.S1_s_at11/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.12663.1.S1_at11/112+34494718..34498687expressed protein
LOC_Os02g56360Os.51194.1.A1_x_at7/112+34494718..34498687expressed protein
LOC_Os02g56360OsAffx.11133.1.S1_at1/112+34494718..34498687expressed protein
LOC_Os02g56370OsAffx.18050.2.S1_at11/112+34503842..34506710wall-associated kinase-like 1, putative, expressed
LOC_Os02g56380Os.49913.1.S1_at11/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56380OsAffx.24548.1.S1_x_at1/112+34509263..34513579Calcium binding EGF domain containing protein
LOC_Os02g56390Os.14919.1.S1_at5/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390Os.56216.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56390OsAffx.29313.1.S1_at1/112+34515833..34521811transposon protein, putative, Mutator sub-class
LOC_Os02g56400OsAffx.3089.1.S1_at11/112+34525687..34528410Calcium binding EGF domain containing protein
LOC_Os02g56410Os.53217.1.S1_x_at3/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.43567.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410Os.38172.1.S1_x_at2/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g56410OsAffx.26987.1.S1_at1/112+34533662..34534906retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49913.1.S1_at--679--6211Chr02:34511289..34511313 (25 bp)
GAGGCTGCAATTGCCACGTTGGTGC
LOC_Os02g56380
Os.49913.1.S1_at--199--2511Chr02:34511260..34511284 (25 bp)
AACTTGTGGGTACTTGGACCCTGAG
LOC_Os02g56380
Os.49913.1.S1_at--535--4331Chr02:34511221..34511245 (25 bp)
CCAGTTAACCGATAAGAGCGATGTC
LOC_Os02g56380
Os.49913.1.S1_at--1142--911Chr02:34511153..34511177 (25 bp)
AGGCATTGTACCTAGACGGGCCAGA
LOC_Os02g56380
Os.49913.1.S1_at--771--1911Chr02:34511138..34511162 (25 bp)
ACGGGCCAGAGGAAGACATGAGCTT
LOC_Os02g56380
Os.49913.1.S1_at--580--2111Chr02:34511123..34511147 (25 bp)
ACATGAGCTTGGTGTCACGCTTCAC
LOC_Os02g56380
Os.49913.1.S1_at--112--911Chr02:34511087..34511111 (25 bp)
AGGCTGGTCGTCATCGAGAGCTTAT
LOC_Os02g56380
Os.49913.1.S1_at--427--4951Chr02:34510988..34511012 (25 bp)
GCATGAACGGTGAAGAACGACCAAC
LOC_Os02g56380
Os.49913.1.S1_at--769--5071Chr02:34510915..34510939 (25 bp)
GCACCCTTGGGCTGAAGCTAAAGGT
LOC_Os02g56380
Os.49913.1.S1_at--1069--4371Chr02:34510837..34510861 (25 bp)
CCAATTCAGGCAGCATGATGTTCTT
LOC_Os02g56380
Os.49913.1.S1_at--330--2991Chr02:34510771..34510795 (25 bp)
AATGTTGTTTGCGTTAATCTTTTAT
LOC_Os02g56380
Target Sequence 
GAGGCTGCAATTGCCACGTTGGTGCAGGGAACTTGTGGGTACTTGGACCCTGAGTACCTAATGACATGCCAGTTAACCGA
TAAGAGCGATGTCTACAGTTTTGGTGTTGTCGTGCTGGAGCTTCTAACCAGGAAGAAGGCATTGTACCTAGACGGGCCAG
AGGAAGACATGAGCTTGGTGTCACGCTTCACCACAGCAGTGAAGGCTGGTCGTCATCGAGAGCTTATGGACAGCCAAGTG
AGGAAAGAGATGAACGACGAAATGGCAACAGAGATTGCAGACCTCCTCATGCGATGCCTAAGCATGAACGGTGAAGAACG
ACCAACGATGAAAGAGGTAGCAGAGAGGTTGGAGATGTTGAGGAGATACCAGCAGCACCCTTGGGCTGAAGCTAAAGGTA
ATGCTGAGGAGAATCAAAGCTTGCTTGGCATTGAACATCAAAATCCAAATTACCAATTCAGGCAGCATGATGTTCTTGAT
CTGGAAGAAGGAAGTACATATACATTTAGCTTGTAGATAATGTTGTTTGCGTTAATCTTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49913.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis