Browse Element(s) Details


Os.50180.1.S1_at

Description gb:AK119998.1
DB_XREF= gi:37989621
TID=Os.50180.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-H04, full insert sequence.
FL= gb:AK119998.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0510011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05040OsAffx.26738.1.S1_at11/115+2430723..2431318expressed protein
LOC_Os05g05050Os.27639.1.S1_x_at9/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.8980.1.S1_at4/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05050OsAffx.5632.1.A1_at1/115+2432300..2437728transposon protein, putative, unclassified
LOC_Os05g05060Os.8557.1.S1_at4/115+2442700..2442936expressed protein
LOC_Os05g05070OsAffx.4254.1.S1_at11/115+2445862..2446083hypothetical protein
LOC_Os05g05080OsAffx.26739.1.S1_s_at11/115+2448846..2449296expressed protein
LOC_Os05g05090Os.41695.15.S1_s_at11/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.5.S1_x_at9/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.3.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.2.S1_x_at8/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05090Os.41695.4.S1_x_at1/115+2451121..2455529Transposable element protein, putative, MuDR
LOC_Os05g05100Os.50180.1.S1_at11/115+2455922..2456492expressed protein
LOC_Os05g05110Os.51864.1.S1_at11/115+2460207..2460655expressed protein
LOC_Os05g05120OsAffx.14551.1.S1_at11/115+2469873..2470130hypothetical protein
LOC_Os05g05130Os.17855.1.S1_at11/115+2473057..2477460expressed protein
LOC_Os05g05140Os.17779.1.S1_at11/115+2477880..2481390expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50180.1.S1_at--119--6991Chr05:2456395..2456419 (25 bp)
GTACGGAGTAATTAGCTAGCCTTTC
LOC_Os05g05100
Os.50180.1.S1_at--1083--10451Chr05:2456384..2456408 (25 bp)
TTAGCTAGCCTTTCTCTGTGTGTGT
LOC_Os05g05100
Os.50180.1.S1_at--1068--3091Chr05:2456341..2456365 (25 bp)
AATATGCCGGCGGAGATCAGCGTCC
LOC_Os05g05100
Os.50180.1.S1_at--397--391Chr05:2456326..2456350 (25 bp)
ATCAGCGTCCTCAGGGTGGATAGGA
LOC_Os05g05100
Os.50180.1.S1_at--210--4611Chr05:2456203..2456227 (25 bp)
GCGACTAGTACTGCAGGCCGCAGCA
LOC_Os05g05100
Os.50180.1.S1_at--223--3491Chr05:2456190..2456214 (25 bp)
CAGGCCGCAGCAGCATTGACGCGGA
LOC_Os05g05100
Os.50180.1.S1_at--635--10531Chr05:2456155..2456179 (25 bp)
TTCATCAACAGGGTGAGGCGGCAAT
LOC_Os05g05100
Os.50180.1.S1_at--278--4111Chr05:2456106..2456130 (25 bp)
CGACAAGGCGTTAGATCATCAGAAT
LOC_Os05g05100
Os.50180.1.S1_at--1142--2551Chr05:2456027..2456051 (25 bp)
AACTGGATTGATACGTAGTACTGTA
LOC_Os05g05100
Os.50180.1.S1_at--858--9311Chr05:2455979..2456003 (25 bp)
TCGAGGTTTCATTATTTAGGTAGGC
LOC_Os05g05100
Os.50180.1.S1_at--145--251Chr05:2455927..2455951 (25 bp)
ATATGTTCCTTAAACGTCGAGTCAA
LOC_Os05g05100
Target Sequence 
GTACGGAGTAATTAGCTAGCCTTTCTCTGTGTGTGTGAGCAAGACAGATTAATTAATATGCCGGCGGAGATCAGCGTCCT
CAGGGTGGATAGGATCGAGCCGGCGAAGAAGACGAAGACGCCGCCGCCGCTGCCGACGGCGGTGAACTCGGTGCAGACGC
CGAGGATGGGCGGCGGAGCACCGGCACCGGCGGCGACTAGTACTGCAGGCCGCAGCAGCATTGACGCGGAGGCCGAGGGG
TTCATCAACAGGGTGAGGCGGCAATGGGCGGCGGAGTCGTCGTCGGCGGCGACAAGGCGTTAGATCATCAGAATGTTTTC
TGAGATTTTTTATCGTAGTTTGGTTGTTGTTGTTAATTGTTTGTCATTAACTGGATTGATACGTAGTACTGTAGTTTACT
TTTAACAAATATATAGTCGAGGTTTCATTATTTAGGTAGGCTATAAAGCTATAAATATGTATACATATATATGTTCCTTA
AACGTCGAGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis