Browse Element(s) Details


Os.50307.1.S1_at

Description gb:AK120640.1
DB_XREF= gi:37990263
TID=Os.50307.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013154C21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013154C21, full insert sequence.
FL= gb:AK120640.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g490202/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48970Os.11684.1.S1_at11/115+28001850..28009148Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g48980Os.9217.1.S1_at11/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48980Os.57489.1.S1_x_at1/115+28009572..28011297Ras-related protein Rab11B, putative, expressed
LOC_Os05g48990OsAffx.27375.1.S1_at11/115+28017023..28021784Homeobox domain containing protein, expressed
LOC_Os05g49000OsAffx.27376.1.S1_at10/115+28024019..28025626hypothetical protein
LOC_Os05g49000Os.13960.1.S1_at2/115+28024019..28025626hypothetical protein
LOC_Os05g49010OsAffx.27377.1.S1_at10/115+28026168..28027036AP2 domain containing protein, expressed
LOC_Os05g49020Os.50307.1.S1_at2/115+28029470..28031419hypothetical protein
LOC_Os05g49030Os.6511.1.S1_at11/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49030Os.9361.1.S1_s_at2/115+28035018..2803722060S ribosomal protein L18a, putative, expressed
LOC_Os05g49040Os.51652.1.S1_at11/115+28039708..28041531membrane protein, putative, expressed
LOC_Os05g49050Os.25029.1.S1_at11/115+28041967..28044781Urease accessory protein ureG, putative, expressed
LOC_Os05g49060Os.40415.1.A1_s_at11/115+28045175..28047932expressed protein
LOC_Os05g49060Os.9118.1.S1_at11/115+28045175..28047932expressed protein
LOC_Os05g49070OsAffx.27378.1.S1_x_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49070OsAffx.27378.1.S1_at11/115+28048974..28049822NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os05g49080NANA5+28050088..28050757expressed protein
LOC_Os05g49090Os.47130.4.A1_x_at2/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090Os.27455.2.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified
LOC_Os05g49090OsAffx.15163.1.S1_at1/115+28053259..28056094retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50307.1.S1_at--114--1771NONE
ACCGGGCCAGGTTATGGTCCTATTG
NONE
Os.50307.1.S1_at--778--10711Chr05:28030763..28030787 (25 bp)
TTGCTGCCATCCCATGGTATGTTGG
LOC_Os05g49020
Os.50307.1.S1_at--325--1011Chr05:28030836..28030860 (25 bp)
AGGATATGTTGCCTGCACTGTTGCT
LOC_Os05g49020
Os.50307.1.S1_at--931--6671NONE
GTTGCTGCTGTAATTGCCGCAATTG
NONE
Os.50307.1.S1_at--348--5951Chr05:28031403..28031427 (25 bp)
GAGCACACGTATGGTGAGCTGCCTC
NONE
Os.50307.1.S1_at--913--8911Chr05:28031417..28031441 (25 bp)
TGAGCTGCCTCCGAGTTTCTAAGGA
NONE
Os.50307.1.S1_at--695--6091Chr05:28031440..28031464 (25 bp)
GAGTCACTGCATGTAAATGGCCTGT
NONE
Os.50307.1.S1_at--837--6791Chr05:28031463..28031487 (25 bp)
GTTATTATTTGAGACCCTGCACTGG
NONE
Os.50307.1.S1_at--719--4191Chr05:28031477..28031501 (25 bp)
CCCTGCACTGGGTCATATGATCATA
NONE
Os.50307.1.S1_at--265--10171Chr05:28031558..28031582 (25 bp)
TATATCGAACCATTGGACCCTCGGT
NONE
Os.50307.1.S1_at--871--5811Chr05:28031573..28031597 (25 bp)
GACCCTCGGTGTTCATATACTTTGT
NONE
Target Sequence 
ACCGGGCCAGGTTATGGTCCTATTGCTGAGGGAAGGCCAGTAAGAATGCGCCGCCTTCCTTGTTGTGGTCTTGGGTTAGG
CTGGCTTCTGTTTATTGCTGGATTTTTCCTTGCTGCCATCCCATGGTATGTTGGGGCTTTCATACTAATATGTGTCCGAG
TACATGACTACAGAGAGAAACCAGGATATGTTGCCTGCACTGTTGCTGCTGTAATTGCCGCAATTGTCATCCCCTTGGGG
TTAACCAAAGGAGCACACGTATGGTGAGCTGCCTCCGAGTTTCTAAGGAGTCACTGCATGTAAATGGCCTGTTATTATTT
GAGACCCTGCACTGGGTCATATGATCATATCACTTGTATATGTGTATGGATGGTAATATAGTGAGCAACTTCAGTGTGGT
AATCTTATATCGAACCATTGGACCCTCGGTGTTCATATACTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis