Browse Element(s) Details


Os.50322.1.S1_at

Description gb:AK108815.1
DB_XREF= gi:32994024
TID=Os.50322.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50322 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-151-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-E05, full insert sequence.
FL= gb:AK108815.1 gb:AK120727.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0193011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01860OsAffx.31566.2.S1_x_at11/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.31566.2.S1_at9/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01860OsAffx.17654.3.S1_x_at1/112+477465..480204transposon protein, putative, unclassified
LOC_Os02g01870Os.9094.1.S1_at1/112+482342..483900expressed protein
LOC_Os02g01880Os.38764.1.S1_x_at8/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880OsAffx.24051.1.S1_x_at4/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.45173.1.S1_x_at3/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.10731.1.A1_a_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.48015.1.A1_x_at2/112+484667..487862Sec63 domain containing protein
LOC_Os02g01880Os.17297.1.S1_at1/112+484667..487862Sec63 domain containing protein
LOC_Os02g01890Os.53775.1.S1_at10/112+488913..490588Cytochrome P450 family protein, expressed
LOC_Os02g01900NANA2+491452..492594hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein
LOC_Os02g01920Os.10543.1.S1_at11/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01920OsAffx.2480.1.S1_at5/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01930Os.50322.1.S1_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.9094.1.S2_s_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.50322.1.S2_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.56070.1.S1_x_at1/112+500341..504146expressed protein
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50322.1.S1_at--615--1511Chr02:503069..503093 (25 bp)
AGCAGTCTCCTCGAGGAAGTCGCGG
LOC_Os02g01930
Os.50322.1.S1_at--766--691Chr02:503005..503029 (25 bp)
ATGAGCGCGCGCGTGACGTGGTCGA
LOC_Os02g01930
Os.50322.1.S1_at--792--1711Chr02:502777..502801 (25 bp)
ACCACCATTCCTTCTGAGGTTTCCT
LOC_Os02g01930
Os.50322.1.S1_at--1049--71Chr02:502771..502795 (25 bp)
ATTCCTTCTGAGGTTTCCTTCCGTG
LOC_Os02g01930
Os.50322.1.S1_at--436--3631Chr02:502754..502778 (25 bp)
CTTCCGTGGAGGGAAACCCACGATG
LOC_Os02g01930
Os.50322.1.S1_at--662--2371Chr02:502741..502765 (25 bp)
AAACCCACGATGGTAGTTGGCTGTT
LOC_Os02g01930
Os.50322.1.S1_at--987--3671Chr02:502668..502692 (25 bp)
CTTTCTGTACTCTACCATTCTTTGA
LOC_Os02g01930
Os.50322.1.S1_at--749--8751Chr02:502663..502687 (25 bp)
TGTACTCTACCATTCTTTGATTTTT
LOC_Os02g01930
Os.50322.1.S1_at--980--3831Chr02:502627..502651 (25 bp)
CTGCTGCCTTTGTGATCCTGTGAAG
LOC_Os02g01930
Os.50322.1.S1_at--1070--8671Chr02:502617..502641 (25 bp)
TGTGATCCTGTGAAGTGTACATTTG
LOC_Os02g01930
Os.50322.1.S1_at--878--7671Chr02:502569..502593 (25 bp)
GGGTTAGTGTGTATTGCTGTTCAAT
LOC_Os02g01930
Target Sequence 
AGCAGTCTCCTCGAGGAAGTCGCGGAGGAGGAGGAGGAAGAGCAGCTGGTGATGGGCGCGACCGATGAGCGCGCGCGTGA
CGTGGTCGAGCGCGCCGAGGCGCTCGCCGCCGCGTGCCGGGCTCTGGAGGAGGGCCTCGCGCCGCTGGAGCGGCAGGTGC
GCGCCGTGTTCCACCGCGTGGTGGCCAGCCGCGGCGAGGTGGTGCGCATCATGGAGCACAGCACGCGCAGCAACAGCAGC
GCCACCGCCAGCGCCGCGGCGGCGGCGGCGTCCGGCTCCGGCGCGCCGCCTCACCACCATTCCTTCTGAGGTTTCCTTCC
GTGGAGGGAAACCCACGATGGTAGTTGGCTGTTGATTTGATTTAATTAGGAGGATGATAAAAAAAAATCTCTCTTTTTCC
CCTTTCTGTACTCTACCATTCTTTGATTTTTNTGTGCTGCTGCTGCTGCCTTTGTGATCCTGTGAAGTGTACATTTGCTT
GTAAAAACTAACTTTTTGTTGGGTTAGTGTGTATTGCTGTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50322.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis