Browse Element(s) Details

Os.50617.1.S2_x_at

Description

gb:AK122144.1
DB_XREF= gi:37991790
TID=Os.50617.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50617 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136K12, full insert sequence.
FL= gb:AK106251.1 gb:AK062872.1 gb:AK122144.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os01g71100	11/11	Leucine Rich Repeat family protein, expressed
LOC_Os01g71114	1/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os01g71050	Os.28078.1.S1_at	11/11	1	+	41444065..41449088	MSP domain containing protein, expressed
LOC_Os01g71060	OsAffx.21834.1.S1_x_at	11/11	1	+	41453387..41454526	xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71070	Os.30593.1.S1_at	10/11	1	+	41460349..41461832	xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71080	Os.18185.1.S1_at	11/11	1	+	41466060..41467498	xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71090	Os.4856.1.S1_at	11/11	1	+	41468853..41470301	xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71100	OsAffx.23995.2.S1_x_at	11/11	1	+	41472312..41481519	Leucine Rich Repeat family protein, expressed
LOC_Os01g71100	Os.50617.1.S2_x_at	11/11	1	+	41472312..41481519	Leucine Rich Repeat family protein, expressed
LOC_Os01g71100	Os.50617.1.S1_at	10/11	1	+	41472312..41481519	Leucine Rich Repeat family protein, expressed
LOC_Os01g71100	Os.27968.1.S1_x_at	7/11	1	+	41472312..41481519	Leucine Rich Repeat family protein, expressed
LOC_Os01g71100	Os.34865.2.S1_x_at	1/11	1	+	41472312..41481519	Leucine Rich Repeat family protein, expressed
LOC_Os01g71100	Os.11330.1.S1_x_at	1/11	1	+	41472312..41481519	Leucine Rich Repeat family protein, expressed
LOC_Os01g71100	Os.11330.2.S1_x_at	1/11	1	+	41472312..41481519	Leucine Rich Repeat family protein, expressed
LOC_Os01g71100	Os.11330.1.S1_a_at	1/11	1	+	41472312..41481519	Leucine Rich Repeat family protein, expressed
LOC_Os01g71114	Os.34865.1.S1_s_at	11/11	1	+	41482666..41487575	Leucine Rich Repeat family protein, expressed
LOC_Os01g71114	Os.34865.3.S1_x_at	11/11	1	+	41482666..41487575	Leucine Rich Repeat family protein, expressed
LOC_Os01g71114	OsAffx.23995.1.S1_at	11/11	1	+	41482666..41487575	Leucine Rich Repeat family protein, expressed
LOC_Os01g71114	Os.34865.2.S1_x_at	6/11	1	+	41482666..41487575	Leucine Rich Repeat family protein, expressed
LOC_Os01g71114	Os.50617.1.S2_x_at	1/11	1	+	41482666..41487575	Leucine Rich Repeat family protein, expressed
LOC_Os01g71130	Os.30331.1.S1_at	11/11	1	+	41493084..41494751	xylanase inhibitor TAXI-III, putative, expressed
LOC_Os01g71140	Os.36248.1.S1_at	11/11	1	+	41496376..41497851	xylanase inhibitor TAXI-IV, putative, expressed
LOC_Os01g71150	OsAffx.26553.2.S1_at	1/11	1	+	41499243..41499803	hypothetical protein
LOC_Os01g71160	OsAffx.23996.1.S1_at	11/11	1	+	41503240..41504544	xylanase inhibitor precursor, putative, expressed
LOC_Os01g71170	OsAffx.11813.1.S1_at	11/11	1	+	41506282..41507216	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50617.1.S2_x_at--133--175	1	Chr01:41477275..41477299 (25 bp)	ACCTATCTGGGTGTGCTAAGCTTGA	LOC_Os01g71100
Os.50617.1.S2_x_at--991--357	1	Chr01:41477202..41477226 (25 bp)	CATATCAGGTTGTTGTGCTCTTCAA	LOC_Os01g71100
Os.50617.1.S2_x_at--559--929	1	Chr01:41477173..41477197 (25 bp)	TCCCTGGTAAATTCGGTAGCCTTGC	LOC_Os01g71100
Os.50617.1.S2_x_at--638--697	1	Chr01:41477158..41477182 (25 bp)	GTAGCCTTGCTAAACTCTCATTTGT	LOC_Os01g71100
Os.50617.1.S2_x_at--933--649	1	Chr01:41477096..41477120 (25 bp)	GATAGTCTTAACCTTGAGTCTCTAG	LOC_Os01g71100
Os.50617.1.S2_x_at--369--573	1	Chr01:41476982..41477006 (25 bp)	GACTGCTACAGGGTTCAAGTGCTAC	LOC_Os01g71100
Os.50617.1.S2_x_at--666--975	2	Chr01:41476920..41476944 (25 bp)	TAATCTTTCAGACTGCCATGGGCTG	LOC_Os01g71100
Os.50617.1.S2_x_at--646--833	1	Chr01:41476900..41476924 (25 bp)	GGCTGATACAACTCCCTGAATGCTT	LOC_Os01g71100
Os.50617.1.S2_x_at--740--385	1	Chr01:41476885..41476909 (25 bp)	CTGAATGCTTTGGTGATCTCTCTGA	LOC_Os01g71100
Os.50617.1.S2_x_at--59--47	1	Chr01:41476870..41476894 (25 bp)	ATCTCTCTGAGCTCCAGTCTTTGAA	LOC_Os01g71100
Os.50617.1.S2_x_at--881--979	1	Chr01:41476830..41476854 (25 bp)	TAAGCTACAGTCATTGCCCTGGTCA	LOC_Os01g71100

Target Sequence

ACCTATCTGGGTGTGCTAAGCTTGAAGAGTTGCCTGAATCAATTAACAACCTTAAATGCTTACAGCATCTAGACATATCA
GGTTGTTGTGCTCTTCAAAAGCTCCCTGGTAAATTCGGTAGCCTTGCTAAACTCTCATTTGTAAACTTGTCAAGTTGTTC
AAAGCTAACCAAACTTCCAGATAGTCTTAACCTTGAGTCTCTAGAGCACCTAATCCTCTCAGACTGCCATGAGCTAGAAC
AACTACCAGAAGATCTTGGTAATCTTTATAGACTTGAGGTTTTGGATATGTCTGACTGCTACAGGGTTCAAGTGCTACCA
AAAACCTTTTGCCAACTTAAGCATTTGAAATACCTTAATCTTTCAGACTGCCATGGGCTGATACAACTCCCTGAATGCTT
TGGTGATCTCTCTGAGCTCCAGTCTTTGAACCTCACAAGTTGTTCTAAGCTACAGTCATTGCCCTGGTCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis