Browse Element(s) Details


Os.5110.1.S1_at

Description gb:AK099536.1
DB_XREF= gi:32984745
TID=Os.5110.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013032A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013032A06, full insert sequence.
FL= gb:AK099536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4634011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46270NANA7+27608556..27611504retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g46280Os.20617.2.S1_x_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.1.S1_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.20617.2.S1_s_at11/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46280Os.9159.2.S1_x_at1/117+27613702..27616943Glycosyl hydrolase family 1 protein, expressed
LOC_Os07g46290OsAffx.28931.1.S1_at11/117+27617319..27618875hypothetical protein
LOC_Os07g46300Os.25569.1.S1_at10/117+27619282..27621942expressed protein
LOC_Os07g46310Os.6595.1.S1_a_at11/117+27622490..27625044CobN/magnesium chelatase family protein
LOC_Os07g46320Os.37215.1.S1_at11/117+27626632..27628275integral membrane protein, putative, expressed
LOC_Os07g46330Os.5160.1.S1_at10/117+27629053..27631630expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_s_at11/117+27633820..27636897expressed protein
LOC_Os07g46340Os.5110.1.S1_at11/117+27633820..27636897expressed protein
LOC_Os07g46340OsAffx.16733.1.S1_at9/117+27633820..27636897expressed protein
LOC_Os07g46350Os.6035.1.S1_at11/117+27637160..27642075Serine carboxypeptidase II-3 precursor, putative, expressed
LOC_Os07g46360Os.30832.1.S1_at11/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46360OsAffx.10957.1.S1_x_at1/117+27651329..27652387lactoylglutathione lyase family protein, putative, expressed
LOC_Os07g46370Os.6412.1.S1_at11/117+27654403..27664179WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5110.1.S1_at--367--3411Chr07:27636586..27636610 (25 bp)
CAGCAGAATGAACTTTACACTGATT
LOC_Os07g46340
Os.5110.1.S1_at--706--3331Chr07:27636603..27636627 (25 bp)
CACTGATTCATCTTACAACGTTTGT
LOC_Os07g46340
Os.5110.1.S1_at--365--3291Chr07:27636652..27636676 (25 bp)
CAAATGATGTGATGTTGCCACCATT
LOC_Os07g46340
Os.5110.1.S1_at--806--2351Chr07:27636695..27636719 (25 bp)
AAAGCGGGCCTTTGCAGGTACAAAT
LOC_Os07g46340
Os.5110.1.S1_at--583--311Chr07:27636718..27636742 (25 bp)
ATACTTGTTGACTGATCATGTGAGA
LOC_Os07g46340
Os.5110.1.S1_at--255--5251Chr07:27636741..27636765 (25 bp)
GAATCAGCGAGTCATTGTATTGTGC
LOC_Os07g46340
Os.5110.1.S1_at--616--8771Chr07:27636756..27636780 (25 bp)
TGTATTGTGCTACCACTGCTTTTTT
LOC_Os07g46340
Os.5110.1.S1_at--954--5111Chr07:27636798..27636822 (25 bp)
GCACAAAGAATTGGTTGGCACATTT
LOC_Os07g46340
Os.5110.1.S1_at--147--3031Chr07:27636832..27636856 (25 bp)
AATGCCCTCAGAAACATTTGTTTTC
LOC_Os07g46340
Os.5110.1.S1_at--81--2071Chr07:27636845..27636869 (25 bp)
ACATTTGTTTTCATTCGTTGGTAAT
LOC_Os07g46340
Os.5110.1.S1_at--523--5551Chr07:27636872..27636896 (25 bp)
GAAAGCAATTGGCATTTTTTAAGGC
LOC_Os07g46340
Target Sequence 
CAGCAGAATGAACTTTACACTGATTCATCTTACAACGTTTGTAAATTGTTATAATTTGTACAAGATCAAATGATGTGATG
TTGCCACCATTGTGGCCATCCAAAGATGCAAAGCGGGCCTTTGCAGGTACAAATACTTGTTGACTGATCATGTGAGAATC
AGCGAGTCATTGTATTGTGCTACCACTGCTTTTTTTTGTGTTGTGTGGGAAGGCACAAAGAATTGGTTGGCACATTTGAG
GAAGAAAATGCCCTCAGAAACATTTGTTTTCATTCGTTGGTAATGTGAAAGCAATTGGCATTTTTTAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis