Browse Element(s) Details


Os.51599.2.S1_at

Description gb:AK063140.1
DB_XREF= gi:32973158
TID=Os.51599.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-G07, full insert sequence.
FL= gb:AK063140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5304011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os04g4419010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53050OsAffx.30177.1.S1_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050OsAffx.30177.1.S1_x_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050Os.37971.1.A1_at1/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53060OsAffx.14390.1.S1_at11/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53060OsAffx.26587.1.S1_x_at2/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53070OsAffx.26585.1.S1_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070OsAffx.26585.1.S1_s_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070Os.55000.1.S1_x_at1/114+31390439..31391773hypothetical protein
LOC_Os04g53080OsAffx.26586.1.S1_at8/114+31394274..31394633hypothetical protein
LOC_Os04g53090Os.38395.3.S1_x_at11/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.2.S1_x_at9/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.4.S1_x_at5/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.1.S1_at1/114+31398348..31404275SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0019684biological_processphotosynthesis, light reaction
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0009654cellular_componentoxygen evolving complex
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51599.2.S1_at--79--7393Chr04:31370127..31370151 (25 bp)
GTGAGCTGCTATTGCTGTTCTGTTG
LOC_Os04g53040
Os.51599.2.S1_at--981--3393Chr04:31370261..31370285 (25 bp)
CAGAGGAATTGTTTGCCGGTTGTGC
LOC_Os04g53040
Os.51599.2.S1_at--205--5933Chr04:31370322..31370346 (25 bp)
GAGCTTGTGAGTATTGTACTGCTGT
LOC_Os04g53040
Os.51599.2.S1_at--1088--2733Chr04:31370369..31370393 (25 bp)
AAGAAGGGAGTATTGCTGCTGGATC
LOC_Os04g53040
Os.51599.2.S1_at--3--8633Chr04:31370400..31370424 (25 bp)
TGGTGTCGTGTGTGCTGAAGATTAC
LOC_Os04g53040
Os.51599.2.S1_at--765--1613Chr04:31370454..31370478 (25 bp)
AGCTGTAGCTAGCTTCATCTAGAAG
LOC_Os04g53040
Os.51599.2.S1_at--717--10073Chr04:31370557..31370581 (25 bp)
TAGTGCTTCAGATTGGCAGGCAACC
LOC_Os04g53040
Os.51599.2.S1_at--664--5012Chr04:31370572..31370596 (25 bp)
GCAGGCAACCAACCAAAATTCGTGT
LOC_Os04g53040
Os.51599.2.S1_at--512--1433Chr04:31370602..31370626 (25 bp)
AGAACACAGTCCAAGCCTCGGCAGT
LOC_Os04g53040
Os.51599.2.S1_at--208--4733Chr04:31370649..31370673 (25 bp)
GCTGTGTCGAGTTCCCTGATCAGGA
LOC_Os04g53040
Os.51599.2.S1_at--1160--7593Chr04:31370688..31370712 (25 bp)
GGGACGTTGTCTTCAAGGTGTTAGA
LOC_Os04g53040
Target Sequence 
GTGAGCTGCTATTGCTGTTCTGTTGCTGAGGCAGAGAAGATCGAGCTGAGGATTTGGTAGTGTGCTGTTGCTGCTGAAAG
GAAAAGGGGAACACAAATTTGGTAAGTGTGTTGTTGCTGTTGCTGTTGAGCGAGCAGAGGAATTGTTTGCCGGTTGTGCT
ATTGGTGTGGCTTGTGTGTGCTGCGGCAAGGAGGTGAGCTTGTGAGTATTGTACTGCTGTGTGTGGTTGAGAAAGGAAGA
AAAAGAAGGGAGTATTGCTGCTGGATCTGTTGGTGGTGTCGTGTGTGCTGAAGATTACAGGTGCAGAGAGCAATAGCAGG
TGAGGAAAGCTGTAGCTAGCTTCATCTAGAAGGGAAGAAGCGGCTTTGGTGTTGGAAATTAATTATTGTCAAGAAGTAAG
GCAACAGGTTGTGCAAGGTGAATGTGAAGTTAGTGCTTCAGATTGGCAGGCAACCAACCAAAATTCGTGTGTGCGAGAAC
ACAGTCCAAGCCTCGGCAGTCACAGAGAGGGAGAGGGGTGCTGCTGTGTCGAGTTCCCTGATCAGGAGGAAAGAAAACCA
GGGGACGTTGTCTTCAAGGTGTTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51599.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis