Browse Element(s) Details


Os.51724.1.S1_at

Description gb:AK063531.1
DB_XREF= gi:32973549
TID=Os.51724.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51724 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B03, full insert sequence.
FL= gb:AK063531.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4072011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40660Os.22519.1.A1_at10/114+23914881..23919303MA3 domain-containing protein, putative, expressed
LOC_Os04g40670Os.53802.1.S1_at11/114+23920272..23923315expressed protein
LOC_Os04g40680Os.50596.1.S1_at6/114+23926935..23928467ubiquitin family protein, putative
LOC_Os04g40690OsAffx.20313.1.S1_x_at2/114+23931957..23933982hypothetical protein
LOC_Os04g40700Os.50575.1.S1_at11/114+23937413..23941944expressed protein
LOC_Os04g40700Os.50575.2.S1_x_at11/114+23937413..23941944expressed protein
LOC_Os04g40720Os.51724.1.S1_at11/114+23942340..23948833expressed protein
LOC_Os04g40720OsAffx.14221.1.S1_x_at10/114+23942340..23948833expressed protein
LOC_Os04g40730Os.12839.1.S1_at10/114+23956532..23959881oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g40740Os.18149.1.S1_x_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40740Os.18149.2.S1_at10/114+23961586..23968165Kelch motif family protein, expressed
LOC_Os04g40750OsAffx.26408.1.S1_x_at9/114+23968824..23969632hypothetical protein
LOC_Os04g40750OsAffx.26408.1.S1_at8/114+23968824..23969632hypothetical protein
LOC_Os04g40760OsAffx.26409.3.S1_at10/114+23970339..23972164F-box domain containing protein
LOC_Os04g40770OsAffx.26409.1.S1_at10/114+23972914..23976255F-box domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51724.1.S1_at--240--8132Chr07:27307820..27307844 (25 bp)
GGACATTTTCTGAGACTGAACTTGA
NONE
Os.51724.1.S1_at--603--2452Chr07:27307859..27307883 (25 bp)
AACACGGACAGCTTTGGTTTTCCAT
NONE
Os.51724.1.S1_at--514--6792Chr07:27307875..27307899 (25 bp)
GTTTTCCATTATTTTCATCCACCTG
NONE
Os.51724.1.S1_at--714--171Chr04:23942456..23942480 (25 bp)
ATTTTCATCCACCTGATTGCATGCC
LOC_Os04g40720
Os.51724.1.S1_at--485--1771Chr04:23942446..23942470 (25 bp)
ACCTGATTGCATGCCCTGGAGTTTG
LOC_Os04g40720
Os.51724.1.S1_at--156--4552Chr07:27307907..27307931 (25 bp)
GCCCTGGAGTTTGAGCATTGCATAT
NONE
Os.51724.1.S1_at--326--10772Chr07:27307917..27307941 (25 bp)
TTGAGCATTGCATATTAGTATCCCA
NONE
Os.51724.1.S1_at--458--152Chr07:27307930..27307954 (25 bp)
ATTAGTATCCCAACCAGCCTTGATA
NONE
Os.51724.1.S1_at--259--3252Chr07:27307940..27307964 (25 bp)
CAACCAGCCTTGATACCATGTAGTG
NONE
Os.51724.1.S1_at--1033--2272Chr07:27307972..27307996 (25 bp)
AAATGCACTTGGCTGATTCTCATGT
NONE
Os.51724.1.S1_at--611--6571Chr04:23942355..23942379 (25 bp)
GATTCTCATGTTACCACACGGCTTT
LOC_Os04g40720
Target Sequence 
GGACATTTTCTGAGACTGAACTTGATACTTGAAAGAAGAAACACGGACAGCTTTGGTTTTCCATTATTTTCATCCACCTG
ATTGCATGCCCTGGAGTTTGAGCATTGCATATTAGTATCCCAACCAGCCTTGATACCATGTAGTGGAAAGAAAAATGCAC
TTGGCTGATTCTCATGTTACCACACGGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51724.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis