Browse Element(s) Details

Os.5175.1.S1_at

Description

gb:AK102187.1
DB_XREF= gi:32987396
TID=Os.5175.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 30846 dynamin-like protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full insert sequence.
FL= gb:AK058670.1 gb:AK102187.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g13820	11/11	Dynamin-2A, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g13770	OsAffx.24421.1.S1_at	7/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13770	OsAffx.17654.2.S1_at	4/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13780	OsAffx.27622.2.S1_at	10/11	6	+	7641071..7643454	expressed protein
LOC_Os06g13780	OsAffx.27622.1.S1_x_at	8/11	6	+	7641071..7643454	expressed protein
LOC_Os06g13789	NA	NA	6	+	7644975..7645329	NA
LOC_Os06g13800	NA	NA	6	+	7646853..7647415	hypothetical protein
LOC_Os06g13810	Os.10991.1.S1_at	11/11	6	+	7647923..7653339	Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit, putative, expressed
LOC_Os06g13820	Os.5175.1.S1_at	11/11	6	+	7660736..7669035	Dynamin-2A, putative, expressed
LOC_Os06g13830	OsAffx.15414.1.S1_x_at	11/11	6	+	7670279..7673548	Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830	Os.48095.1.S1_s_at	11/11	6	+	7670279..7673548	Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830	OsAffx.15414.1.S1_s_at	11/11	6	+	7670279..7673548	Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830	OsAffx.22010.1.S1_x_at	3/11	6	+	7670279..7673548	Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13839	NA	NA	6	+	7692247..7692891	RNA recognition motif family protein
LOC_Os06g13850	Os.52969.1.S2_at	11/11	6	+	7693325..7695943	F-box domain containing protein, expressed
LOC_Os06g13850	Os.52969.1.S1_at	11/11	6	+	7693325..7695943	F-box domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000911	biological_process	cytokinesis by cell plate formation
GO:0006896	biological_process	Golgi to vacuole transport
GO:0009793	biological_process	embryonic development (sensu Magnoliophyta)
GO:0009920	biological_process	cell plate formation (sensu Magnoliophyta)
GO:0010051	biological_process	vascular tissue pattern formation (sensu Tracheophyta)
GO:0010091	biological_process	trichome branching (sensu Magnoliophyta)
GO:0016192	biological_process	vesicle-mediated transport
GO:0005794	cellular_component	Golgi apparatus
GO:0005874	cellular_component	microtubule
GO:0009504	cellular_component	cell plate
GO:0009535	cellular_component	thylakoid membrane (sensu Viridiplantae)
GO:0003924	molecular_function	GTPase activity
GO:0005515	molecular_function	protein binding
GO:0005525	molecular_function	GTP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.5175.1.S1_at--83--793	1	Chr06:7668460..7668484 (25 bp)	GGATTGGAGGTCTGCCTTCGATTCC	LOC_Os06g13820
Os.5175.1.S1_at--606--257	1	Chr06:7668491..7668515 (25 bp)	AACGGACCCAGCTCAGGCAGCGAAT	LOC_Os06g13820
Os.5175.1.S1_at--705--67	1	Chr06:7668552..7668576 (25 bp)	ATGAAAACGGCGACGTGACCTCCGG	LOC_Os06g13820
Os.5175.1.S1_at--775--335	1	Chr06:7668621..7668645 (25 bp)	CACCTCCTAAATACTAATCACGCTG	LOC_Os06g13820
Os.5175.1.S1_at--297--1019	1	Chr06:7668651..7668675 (25 bp)	TATATATCCATGAACGAGCGCCGTG	LOC_Os06g13820
Os.5175.1.S1_at--962--627	1	Chr06:7668675..7668699 (25 bp)	GATGTATTCTTGCTAGGCACCACGC	LOC_Os06g13820
Os.5175.1.S1_at--946--171	1	Chr06:7668693..7668717 (25 bp)	ACCACGCCCTGTTTCTGATTGATAT	LOC_Os06g13820
Os.5175.1.S1_at--555--345	1	Chr06:7668807..7668831 (25 bp)	CAGGGTACCCTGAGTTGTTTATAGA	LOC_Os06g13820
Os.5175.1.S1_at--699--783	1	Chr06:7668842..7668866 (25 bp)	GGTAATCCATCCATTATCTCTATTG	LOC_Os06g13820
Os.5175.1.S1_at--1038--45	1	Chr06:7668857..7668881 (25 bp)	ATCTCTATTGTTTCGTCATCTTTTT	LOC_Os06g13820
Os.5175.1.S1_at--608--811	1	Chr06:7668929..7668953 (25 bp)	GGACGATCAGTCTAGCTTTGTACTA	LOC_Os06g13820

Target Sequence

GGATTGGAGGTCTGCCTTCGATTCCGCATCCAACGGACCCAGCTCAGGCAGCGAATNCAAGGTCAAGAAGCGCTGATGGA
CGCAGAGGGCGCTATGAAAACGGCGACGTGACCTCCGGTGCCAACTCCGGCAGCCGACGCACTCCAAACCGGTTACCTCC
AGCACCTCCTAAATACTAATCACGCTGATTAGTATATATCCATGAACGAGCGCCGTGATGTATTCTTGCTAGGCACCACG
CCCTGTTTCTGATTGATATTGGTGGCTGGGGTGAGCGGATTTGGGGGATTTGGACTATAGAGAGAGAAAGCGTCTTGTTA
GTGGAGAGATTGCATGAACAATTTGTAAGCAGGGTACCCTGAGTTGTTTATAGAAATATAAATAGGTAATCCATCCATTA
TCTCTATTGTTTCGTCATCTTTTTTTGACTCATTCATGTCTGATTAATCCCCCTGCTTATAGGATTTTGTGGGACGATCA
GTCTAGCTTTGTACTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis