Browse Element(s) Details


Os.52303.1.S1_at

Description gb:AK066260.1
DB_XREF= gi:32976278
TID=Os.52303.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059H13, full insert sequence.
FL= gb:AK066260.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g735007/11expressed protein
LOC_Os06g319206/11retrotransposon protein, putative, unclassified
LOC_Os06g319505/11retrotransposon protein, putative, unclassified
LOC_Os01g233101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52303.1.S1_at--491--7811Chr11:27219208..27219232 (25 bp)
GGTCGGAGACTAGGGCTGTCAACGA
NONE
Os.52303.1.S1_at--335--2217Chr11:27219275..27219299 (25 bp)
ACAAGCTCGAGCCAAGCCTATTGCA
NONE
Os.52303.1.S1_at--118--5877Chr11:27219283..27219307 (25 bp)
GAGCCAAGCCTATTGCACCTTCGAG
NONE
Os.52303.1.S1_at--1091--1716Chr12:21898981..21899001 (21 bp)
ACCTTCGAGCTTTTAGGCAAGTTCG
NONE
Os.52303.1.S1_at--238--43120Chr12:21898982..21899001 (20 bp)
CCTTCGAGCTTTTAGGCAAGTTCGG
NONE
Os.52303.1.S1_at--855--9437Chr11:27219338..27219362 (25 bp)
TCGGTGCCGAGCTCGGCCATAAGTA
NONE
Os.52303.1.S1_at--504--45119Chr11:27219343..27219367 (25 bp)
GCCGAGCTCGGCCATAAGTAGTATA
NONE
Os.52303.1.S1_at--313--40733Chr11:27219345..27219369 (25 bp)
CGAGCTCGGCCATAAGTAGTATAAT
NONE
Os.52303.1.S1_at--415--48127Chr11:27219348..27219372 (25 bp)
GCTCGGCCATAAGTAGTATAATATA
NONE
Os.52303.1.S1_at--1030--3529Chr12:21902925..21902950 (25 bp)
ATAATTATTTTCTAGTAATCACACT
NONE
Os.52303.1.S1_at--122--98527Chr11:27219451..27219475 (25 bp)
TAAATATATTGTGCTAACACATGCT
NONE
Target Sequence 
GGTCGGAGACTAGGGCTGTCAACGAGACGAGCTCGAGCGAGCTCGTCTGCCCAAGCTCGAGCTCGACACAAGCTCGAGCC
AAGCCTATTGCACCTTCGAGCTTTTAGGCAAGTTCGGCTCGAGCTCGAGCTCGGTGCCGAGCTCGGCCATAAGTAGTATA
ATATATATTTTAATAATAATCTCTTGATAAGTATAATTATTTTCTAGTAATCACACTAATAAAAGAGTAGAAAATGATTA
AAATAAATATATTGTGCTAACACATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis