Browse Element(s) Details


Os.52574.1.S1_at

Description gb:AK101116.1
DB_XREF= gi:32986325
TID=Os.52574.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52574 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025G24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025G24, full insert sequence.
FL= gb:AK101116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4145011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41470Os.16617.1.S1_at11/114+24362747..24369638ARI, RING finger protein, putative, expressed
LOC_Os04g41480OsAffx.26415.1.S1_at11/114+24370257..24370964expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.52574.1.S1_at--441--10131Chr04:24342442..24342466 (25 bp)
TATGAAGTCCATTGGCACGGCGCTG
LOC_Os04g41450
Os.52574.1.S1_at--1098--3891Chr04:24342405..24342429 (25 bp)
CTGGGTCTCGCTTCATGGATGGGCA
LOC_Os04g41450
Os.52574.1.S1_at--231--2231Chr04:24342359..24342383 (25 bp)
ACAAGGCTACGAGGCATGGACACCA
LOC_Os04g41450
Os.52574.1.S1_at--1119--2151Chr04:24342302..24342326 (25 bp)
ACAGCCACCTTGACTTGTTTTACTG
LOC_Os04g41450
Os.52574.1.S1_at--948--10331Chr04:24342284..24342308 (25 bp)
TTTACTGGGTGGTTGCTGTTATCGG
LOC_Os04g41450
Os.52574.1.S1_at--658--8291Chr04:24342252..24342276 (25 bp)
GGCTTCTTGAATTACCTGTACTGGG
LOC_Os04g41450
Os.52574.1.S1_at--1016--391Chr04:24342184..24342208 (25 bp)
ATCAGCTGATCAGGACTCACCGTGA
LOC_Os04g41450
Os.52574.1.S1_at--976--8331Chr04:24342056..24342080 (25 bp)
GGCTGGACTTGGTCGTTGATCATTT
LOC_Os04g41450
Os.52574.1.S1_at--927--6971Chr04:24342012..24342036 (25 bp)
GTACCATTCCGACCCAAATGTGTGT
LOC_Os04g41450
Os.52574.1.S1_at--197--2871Chr04:24341985..24342009 (25 bp)
AAGTGGTCGTTTTCTGTGGCAAAAT
LOC_Os04g41450
Os.52574.1.S1_at--171--3031Chr04:24341901..24341925 (25 bp)
AATGCCCAATTATATCTCTTCCTAC
LOC_Os04g41450
Target Sequence
TATGAAGTCCATTGGCACGGCGCTGTTCTGGTGCGAGCTGGGTCTCGCTTCATGGATGGGCACGTTCCTGGTGGAGCTGG
TGAACAAGGCTACGAGGCATGGACACCATAGAGGGTGGCTCGAGGGTACAAGCTTGAACAACAGCCACCTTGACTTGTTT
TACTGGGTGGTTGCTGTTATCGGGCTGCTTGGCTTCTTGAATTACCTGTACTGGGCGAAGAAGTATGCCTACCGGCACAA
TCCACGCATGGTCACCCCATCAGCTGATCAGGACTCACCGTGATAGATTTGATTGCTCTTGAAGCACCATTTACTTCACA
GATGCAAAGCAAAAGGTAACCATGTACTGATGTAAGTTGTATCATGCTGTTTGTGTTCAGTTGATTGGCTGGACTTGGTC
GTTGATCATTTCGACTCAAATGTACATTTTGTACCATTCCGACCCAAATGTGTGTAAAAGTGGTCGTTTTCTGTGGCAAA
ATATATCATTCAGAGACAACTCCAATACAACTGTATGTCTATGACCGTACAAAATTTTACTAATGCCCAATTATATCTCT
TCCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis