Browse Element(s) Details


Os.52876.1.S1_at

Description gb:AK069682.1
DB_XREF= gi:32979706
TID=Os.52876.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023029I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023029I01, full insert sequence.
FL= gb:AK069682.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g310703/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31044Os.31614.1.S1_at11/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_x_at10/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.13139.1.S1_at7/113+17636856..17646749expressed protein
LOC_Os03g31044OsAffx.11199.1.S1_x_at1/113+17636856..17646749expressed protein
LOC_Os03g31060Os.9647.1.S1_at1/113+17650463..17654456retrotransposon protein, putative, unclassified
LOC_Os03g31070OsAffx.22433.5.S1_s_at11/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31070Os.52876.1.S1_at3/113+17657918..17661405U-box domain containing protein, expressed
LOC_Os03g31079NANA3+17663596..17664782hypothetical protein
LOC_Os03g31090Os.12460.1.S1_x_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.1.S1_at11/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31090Os.12460.2.S1_x_at6/113+17669773..1767174540S ribosomal protein S19, putative, expressed
LOC_Os03g31110Os.9404.1.S1_at11/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110OsAffx.4983.1.S1_at3/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31110Os.23162.1.S1_a_at2/113+17674098..17677961AC transposase, putative, expressed
LOC_Os03g31120OsAffx.25312.1.S1_at11/113+17678307..17679946hypothetical protein
LOC_Os03g31134Os.12460.2.S1_x_at10/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.19542.3.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134Os.12460.1.S1_x_at3/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g31134OsAffx.9949.1.S1_at1/113+17682000..17689753retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52876.1.S1_at--794--6491Chr03:17658322..17658346 (25 bp)
GATAGCAGTGTACCTGCTGCTTTTA
LOC_Os03g31070
Os.52876.1.S1_at--426--6131Chr03:17658039..17658063 (25 bp)
GAGGGATTAGTAGGTCTCCGATGAC
LOC_Os03g31070
Os.52876.1.S1_at--743--6291Chr03:17658020..17658044 (25 bp)
GATGACGAATTTGGCCCTTCCCAAT
LOC_Os03g31070
Os.52876.1.S1_at--697--5531Chr03:17657902..17657926 (25 bp)
GAAACCTAGTTTCTGGAGTGTATTT
NONE
Os.52876.1.S1_at--581--2791Chr03:17657857..17657881 (25 bp)
AAGAGGGCTGTCGTTATTTCAGATA
NONE
Os.52876.1.S1_at--837--7611Chr03:17657783..17657807 (25 bp)
GGGAACTTTACTAGACAAATGCTCA
NONE
Os.52876.1.S1_at--574--3011Chr03:17657766..17657790 (25 bp)
AATGCTCAAATAGGGTCGGGCTGTC
NONE
Os.52876.1.S1_at--1001--7791Chr03:17657753..17657777 (25 bp)
GGTCGGGCTGTCGTAATTTCAGTTA
NONE
Os.52876.1.S1_at--255--171Chr03:17657698..17657722 (25 bp)
ATTTTGGACATTTCATCTGATGGTG
NONE
Os.52876.1.S1_at--650--8091Chr03:17657656..17657680 (25 bp)
GGACCATCAACTTTCTGGCATTTTA
NONE
Os.52876.1.S1_at--931--5131Chr03:17657631..17657655 (25 bp)
GCAAAGCAACCAACTTCGTGGCATT
NONE
Target Sequence 
GATAGCAGTGTACCTGCTGCTTTTATTTGTCCAATTAGCATGGAGATCATGAAAGATCCGCAAGTGGCATCTGATGGATT
CACCTATGAAGCGGAGGCCATAAGGTGCTGGTTTGATAGAGGGATTAGTAGGTCTCCGATGACGAATTTGGCCCTTCCCA
ATCTCAATCTCGTCCCTAATCGTGTCCTCCGTTCTTTCATCCATGAGTATCTTCAGCAGCAGCAGCCGAACCCTGCTTAC
CAACAGCAGTTGTCAGAAACCTAGTTTCTGGAGTGTATTTTTTCTTTTGTAAGTAACAGCAAGAGGGCTGTCGTTATTTC
AGATAAGTAGGCAGTAACAGTGAAGTACAAAATGGCAAGAACAACAAATACAGGGGGAACTTTACTAGACAAATGCTCAA
ATAGGGTCGGGCTGTCGTAATTTCAGTTAATGGAGAGGAGGAAAAGGAAGATGGGTGTAATTTTGGACATTTCATCTGAT
GGTGTGGCAAATGAGCAAATTGGACCATCAACTTTCTGGCATTTTAGCAAAGCAACCAACTTCGTGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis