Browse Element(s) Details


Os.53317.2.S1_at

Description gb:AK071951.1
DB_XREF= gi:32981974
TID=Os.53317.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53317 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013085F24, full insert sequence.
FL= gb:AK071951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3979011/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39710OsAffx.31174.4.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39710OsAffx.31174.5.S1_x_at6/119+22784556..22786281retrotransposon protein, putative, unclassified
LOC_Os09g39720Os.12966.1.S1_at11/119+22790130..22791505oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os09g39730OsAffx.27508.10.S1_s_at9/119+22791564..22792383Core histone H2A/H2B/H3/H4 family protein, expressed
LOC_Os09g39740Os.47343.2.S1_x_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39740Os.47343.2.S1_at11/119+22792734..22797417ACT domain-containing protein, putative, expressed
LOC_Os09g39750OsAffx.18061.1.S1_at11/119+22799910..22801700expressed protein
LOC_Os09g39760Os.54835.1.S1_s_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.30215.1.S1_at11/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39760OsAffx.23254.1.S1_x_at1/119+22804201..22806568Pectinesterase family protein, expressed
LOC_Os09g39770Os.10654.1.S1_s_at11/119+22805525..22806568C2 domain containing protein, expressed
LOC_Os09g39780Os.5492.1.S1_at11/119+22809423..22810520Peptidyl-prolyl cis-trans isomerase, putative, expressed
LOC_Os09g39790Os.53317.1.S1_x_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39790Os.53317.2.S1_at11/119+22810710..22813586lipase class 3 family protein, putative, expressed
LOC_Os09g39800OsAffx.30216.1.S1_at11/119+22817548..22817970hypothetical protein
LOC_Os09g39810OsAffx.6536.1.S1_at11/119+22821100..22821495Ethylene-responsive transcription factor 14, putative, expressed
LOC_Os09g39820OsAffx.21171.3.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.20729.1.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.21171.5.S1_x_at1/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.2.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22894.1.S1_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22711.4.A1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.1.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39840NANA9+22838562..22839161retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53317.2.S1_at--309--5591Chr09:22810787..22810811 (25 bp)
GAAATGCTTAACACTATCTTGTTGC
LOC_Os09g39790
Os.53317.2.S1_at--871--3011Chr09:22810785..22810809 (25 bp)
AATGCTTAACACTATCTTGTTGCAT
LOC_Os09g39790
Os.53317.2.S1_at--740--411Chr09:22810772..22810796 (25 bp)
ATCTTGTTGCATGCAGTGAAAGACA
LOC_Os09g39790
Os.53317.2.S1_at--533--8811Chr09:22810768..22810792 (25 bp)
TGTTGCATGCAGTGAAAGACATTGC
LOC_Os09g39790
Os.53317.2.S1_at--1162--1091Chr09:22810758..22810782 (25 bp)
AGTGAAAGACATTGCAGCTGGTGTA
LOC_Os09g39790
Os.53317.2.S1_at--46--2771Chr09:22810753..22810777 (25 bp)
AAGACATTGCAGCTGGTGTAGTTAC
LOC_Os09g39790
Os.53317.2.S1_at--98--5691Chr09:22810751..22810775 (25 bp)
GACATTGCAGCTGGTGTAGTTACTT
LOC_Os09g39790
Os.53317.2.S1_at--930--2071Chr09:22810750..22810774 (25 bp)
ACATTGCAGCTGGTGTAGTTACTTT
LOC_Os09g39790
Os.53317.2.S1_at--570--6771Chr09:22810733..22810757 (25 bp)
GTTACTTTGACTAATTCTCCCCAAG
LOC_Os09g39790
Os.53317.2.S1_at--553--9891Chr09:22810731..22810755 (25 bp)
TACTTTGACTAATTCTCCCCAAGTT
LOC_Os09g39790
Os.53317.2.S1_at--954--10731Chr09:22810727..22810751 (25 bp)
TTGACTAATTCTCCCCAAGTTTTGG
LOC_Os09g39790
Target Sequence 
GAAATGCTTAACACTATCTTGTTGCATGCAGTGAAAGACATTGCAGCTGGTGTAGTTACTTTGACTAATTCTCCCCAAGT
TTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53317.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis