Browse Element(s) Details


Os.53360.1.S1_at

Description gb:AK108565.1
DB_XREF= gi:32993774
TID=Os.53360.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-C09, full insert sequence.
FL= gb:AK108565.1 gb:AK101087.1 gb:AK072261.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5509011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55040Os.6429.1.S1_a_at11/114+32513573..32516474Vacuolar ATP synthase subunit D 1, putative, expressed
LOC_Os04g55050NANA4+32517489..32520773Glutamyl-tRNA, putative, expressed
LOC_Os04g55060Os.13976.1.S1_at11/114+32522310..325274053-oxoacyl-synthase III B, chloroplast precursor, putative, expressed
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53360.1.S1_at--224--2931Chr04:32541032..32541056 (25 bp)
AAGGACTCAGCCCAGATGCATTTGC
LOC_Os04g55090
Os.53360.1.S1_at--864--6331Chr04:32541046..32541070 (25 bp)
GATGCATTTGCTTACAATTCCCTTA
LOC_Os04g55090
Os.53360.1.S1_at--241--10651Chr04:32541063..32541087 (25 bp)
TTCCCTTATTGATGCATTGCTGCAG
LOC_Os04g55090
Os.53360.1.S1_at--153--2811Chr04:32541175..32541199 (25 bp)
AAGATTCCGGGAGCAGAGTCTGACA
LOC_Os04g55090
Os.53360.1.S1_at--95--6591Chr04:32541376..32541400 (25 bp)
GATTGCATTTCCTCTCAACTATTGC
LOC_Os04g55090
Os.53360.1.S1_at--300--9031Chr04:32541398..32541527 (25 bp)
TGCACAGCTGCCCACAGGAATTATG
LOC_Os04g55090
Os.53360.1.S1_at--775--9771Chr04:32541542..32541566 (25 bp)
TAATGGAATGTTTGCCCAAGCTGAG
LOC_Os04g55090
Os.53360.1.S1_at--297--8251Chr04:32541582..32541606 (25 bp)
GGCACTAGTGTGAATTCGGAGAGCT
LOC_Os04g55090
Os.53360.1.S1_at--119--1571Chr04:32541603..32541627 (25 bp)
AGCTATTGCTCCTCACAGATCTATA
LOC_Os04g55090
Os.53360.1.S1_at--265--6431Chr04:32541620..32541644 (25 bp)
GATCTATATGATTACCGTGGTCAAT
LOC_Os04g55090
Os.53360.1.S1_at--958--3131Chr04:32541648..32541672 (25 bp)
AATTACGACATGCTGATATTTCTCA
LOC_Os04g55090
Target Sequence 
AAGGACTCAGCCCAGATGCATTTGCTTACAATTCCCTTATTGATGCATTGCTGCAGAAGGGAATGGTGGACTTAGCTAGA
AAGTATGATGAGGAGATGCTTTCAAAGGGATTATCACCCAAACCAAGGAAGGAACTGGGGACTAAGATTCCGGGAGCAGA
GTCTGACAGTGATAATGCATTGAGTGGCGTACTTTAATAGTTTGATTACTGAGAGCAGTGGTATTAACATGTTCTGGTTA
TCACTAAGATTATGCTGATCTTCNTTTAAAGATAGGCTTCTTTGTGTTGAAAGTCTGAAGGAGATCTGATTTGTGGTGCA
CATGAGTTTAACATTGAAGTAAAAGATTGCATTTCCTCTCAACTATTGCACAGCTGCCCACAGGAATTATGATGATATCC
CTCAATAATGGAATGTTTGCCCAAGCTGAGGACACCTGGGAAGTGGGCACTAGTGTGAATTCGGAGAGCTATTGCTCCTC
ACAGATCTATATGATTACCGTGGTCAATTGAAATTACGACATGCTGATATTTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis