Browse Element(s) Details


Os.534.2.S1_x_at

Description gb:AK060590.1
DB_XREF= gi:32970608
TID=Os.534.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.534 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ppf-1 protein (P0009G03.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D09, full insert sequence.
FL= gb:AK060590.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0580011/11Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05744Os.34163.1.S1_at11/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.38043.1.S1_x_at2/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744OsAffx.10820.1.S1_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05744Os.532.1.S1_s_at1/111+2739309..2744241protein tyrosine phosphatase, putative, expressed
LOC_Os01g05760Os.38043.1.S1_x_at1/111+2749020..2749814protein tyrosine phosphatase, putative
LOC_Os01g05770OsAffx.28023.2.S1_s_at11/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.1.S1_at10/111+2750592..2753880expressed protein
LOC_Os01g05770OsAffx.28023.2.S1_at2/111+2750592..2753880expressed protein
LOC_Os01g05780OsAffx.23126.1.S1_at11/111+2756171..2758195expressed protein
LOC_Os01g05780Os.532.1.S1_s_at9/111+2756171..2758195expressed protein
LOC_Os01g05780Os.38043.1.S1_x_at3/111+2756171..2758195expressed protein
LOC_Os01g05780Os.35288.1.S1_at1/111+2756171..2758195expressed protein
LOC_Os01g05790Os.45364.1.S1_at11/111+2762581..2765404SLT1 protein, putative, expressed
LOC_Os01g05800Os.534.1.S1_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.2.S1_x_at11/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05800Os.534.3.S1_x_at10/111+2766944..2771411Inner membrane protein ALBINO3, chloroplast precursor, putative, expressed
LOC_Os01g05810Os.45875.2.S1_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.2.S1_x_at11/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05810Os.45875.1.S1_x_at3/111+2773790..2778138gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.2.S1_x_at2/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05820Os.45875.1.S1_x_at1/111+2779991..2787256Gamma-glutamyltranspeptidase family protein, expressed
LOC_Os01g05830Os.10096.1.S1_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.1.S1_a_at11/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_x_at10/111+2788178..2792659expressed protein
LOC_Os01g05830Os.10096.2.S1_at7/111+2788178..2792659expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0010020biological_processchloroplast fission
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009706cellular_componentchloroplast inner membrane
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.534.2.S1_x_at--215--3291Chr01:2770007..2770031 (25 bp)
CAAAGCGCTTGCTGCAGGAGATTCA
LOC_Os01g05800
Os.534.2.S1_x_at--1080--1251Chr01:2770025..2770049 (25 bp)
AGATTCAGATCTTTCAGCCTCAACA
LOC_Os01g05800
Os.534.2.S1_x_at--377--2851Chr01:2770551..2770575 (25 bp)
AATTCAGTTGGCCAGTACGGTTGTG
LOC_Os01g05800
Os.534.2.S1_x_at--226--9931Chr01:2770566..2770590 (25 bp)
TACGGTTGTGTAGTTGATCTCGGAC
LOC_Os01g05800
Os.534.2.S1_x_at--590--2931Chr01:2770613..2770637 (25 bp)
AAGGCTAATCTTCAGGTGCAGGACA
LOC_Os01g05800
Os.534.2.S1_x_at--552--7831Chr01:2770656..2770680 (25 bp)
GGTACAGGTGTTTTGCTGGCACACA
LOC_Os01g05800
Os.534.2.S1_x_at--310--5011Chr01:2770728..2770752 (25 bp)
GCATGGCTTGAGTATGTGCTACAAC
LOC_Os01g05800
Os.534.2.S1_x_at--1102--3292Chr07:17038580..17038603 (24 bp)
CAAATTATTCTTGTGCTACTCTGCA
NONE
Os.534.2.S1_x_at--285--4852Chr07:17038593..17038617 (25 bp)
GCTACTCTGCAATGTGGGTACCAAA
NONE
Os.534.2.S1_x_at--764--7831Chr01:2770797..2770821 (25 bp)
GGTACCAAACTCACGCAGGAATTGC
LOC_Os01g05800
Os.534.2.S1_x_at--858--631Chr01:2770838..2770862 (25 bp)
ATGCATTTATTTCCCTCTTGTAACC
LOC_Os01g05800
Target Sequence 
CAAAGCGCTTGCTGCAGGAGATTCAGATCTTTCAGCCTCAACATCAGAGGATGAAGAGTCGGATGATGAGACTACTGAAG
AGGGAGGACCTGAGGAAAGATACAATTCCAGTAGCAACAAGAAACTTCCAAATTACTCCGGAAAGAAGGGCAAAAGATCA
AAGAGGAAGCGCATGGTTCAGTAGGTGTGACAGAACCTGATTGGATTTCATTTTTGTCATTACTGGTTAATTCAGTTGGC
CAGTACGGTTGTGTAGTTGATCTCGGACACAATTTTGATGATCAGTTGGGAAGGCTAATCTTCAGGTGCAGGACAGACAC
GAAACATTCCAGTGGTACAGGTGTTTTGCTGGCACACAGCAAGATGAAAATAGTTCAGTACACTACAATAGGTTTGAGAG
GATAGGCATGGCTTGAGTATGTGCTACAACATAAGAGTAGTACACAAATTATTCTTGTGCTACTCTGCAATGTGGGTACC
AAACTCACGCAGGAATTGCATAATTCATGCTCTACATGCATTTATTTCCCTCTTGTAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.534.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis