Browse Element(s) Details


Os.53636.1.S1_at

Description gb:AK073680.1
DB_XREF= gi:32983703
TID=Os.53636.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53636 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033054M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033054M17, full insert sequence.
FL= gb:AK073680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g226804/11CHY zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22634OsAffx.3297.1.S1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.26852.1.A1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634OsAffx.6281.1.S1_at2/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.12629.1.S2_at1/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22650NANA3+13057480..13058058hypothetical protein
LOC_Os03g22670Os.49739.1.S2_at11/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22670Os.49739.1.S1_at10/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22690Os.11847.1.S1_at11/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22690Os.32544.1.S1_at1/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed
LOC_Os03g22720Os.10709.1.S1_at11/113+13101461..13103329expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53636.1.S1_at--582--1851Chr03:13075616..13075640 (25 bp)
ACGACAAGTAATCGCCCATGCTGTG
LOC_Os03g22680
Os.53636.1.S1_at--662--4331Chr01:24520177..24520273 (24 bp)
CCATGCTGTGCTGATCTGTTTCCAT
NONE
Os.53636.1.S1_at--433--8851Chr03:13075590..13075614 (25 bp)
TGATCTGTTTCCATGTGGCTCTTTC
LOC_Os03g22680
Os.53636.1.S1_at--739--8471NONE
TGGCTCTTTCTTTCTTAGTTTGTGT
NONE
Os.53636.1.S1_at--82--7331Chr07:19997667..19997696 (24 bp)
GTGCTAGATTAGTCATCTCTCTCGT
NONE
Os.53636.1.S1_at--1--471Chr03:13075525..13075967 (25 bp)
ATCTCTCTCGTGTGATCTTGTTCTT
LOC_Os03g22680
Os.53636.1.S1_at--818--10791NONE
TTGTTCTTCTTGGACGCCTGATAAT
NONE
Os.53636.1.S1_at--884--351Chr03:13075488..13075512 (25 bp)
ATAATTGTAGGTTCTCTTGTCCCAT
LOC_Os03g22680
Os.53636.1.S1_at--947--4751NONE
GCTGCAAATGCATGTCAAGCACCGG
NONE
Os.53636.1.S1_at--317--5091NONE
GCACCGGCAGCGATCAATATTATTG
NONE
Os.53636.1.S1_at--538--10051NONE
TAGTATTCAGTAGTACCCGCTGGGT
NONE
Target Sequence 
ACGACAAGTAATCGCCCATGCTGTGCTGATCTGTTTCCATGTGGCTCTTTCTTTCTTAGTTTGTGTCTCNACTTTGTGTG
CTAGATTAGTCATCTCTCTCGTGTGATCTTGTTCTTCTTGGACGCCTGATAATTGTAGGTTCTCTTGTCCCATATGCTCG
ATGCCTATCTTTGACATGGACAAGTTCTTGAGGGCTTTGGACGCTGAGATTGAAGCAAATATGCTGCACATAGATTACAT
GGGAAAGGGATGGATCGTGTGCAACGACTGCAGGGACACGACGCAGGTGTACGCGAGGGTGGCAGGGCACAAGTACTGCC
ATTGCCAGTCTCTCAACACATGCAGGGTGGCTGCCCCGGTGCTCCCTGCTTAATTACATTGAGTAAATTTCATATAAAAT
TCACGCTGCAAATGCATGTCAAGCACCGGCAGCGATCAATATTATTGATTTATACTTAGTATTCAGTAGTACCCGCTGGG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis