Browse Element(s) Details


Os.53679.1.S1_s_at

Description gb:AK073885.1
DB_XREF= gi:32983908
TID=Os.53679.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033073G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033073G16, full insert sequence.
FL= gb:AK073885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3108011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30990OsAffx.6457.1.S1_at4/119+18659141..18659780hypothetical protein
LOC_Os09g31000Os.49662.1.S1_at11/119+18661881..18662544EF hand family protein, expressed
LOC_Os09g31019OsAffx.30103.2.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12239.1.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.3.S1_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.30103.2.S1_s_at11/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019OsAffx.14417.1.S1_at6/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31019Os.12289.1.S1_at1/119+18663103..18670722ubiquitin, putative, expressed
LOC_Os09g31040Os.4784.1.S1_at11/119+18671333..18672102EF hand family protein, expressed
LOC_Os09g31050Os.54074.1.S1_at11/119+18672663..18673793jmjC domain containing protein, expressed
LOC_Os09g31060OsAffx.6459.1.S1_at11/119+18674178..18675341hypothetical protein
LOC_Os09g31080OsAffx.17970.1.S1_at11/119+18684678..18685936expressed protein
LOC_Os09g31080Os.53679.1.S1_s_at11/119+18684678..18685936expressed protein
LOC_Os09g31090Os.50006.1.S2_at11/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31090Os.50006.1.S1_x_at9/119+18686766..18693202HECT-domain family protein, expressed
LOC_Os09g31100OsAffx.30104.1.S1_at11/119+18698445..18700931hypothetical protein
LOC_Os09g31120Os.53322.1.S1_at11/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed
LOC_Os09g31120OsAffx.26754.1.S1_x_at1/119+18706883..18709314Pirin-like protein At1g50590, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53679.1.S1_s_at--584--4011Chr09:18685431..18685455 (25 bp)
CGTCGTCGTACACCGTGGAGTACAT
LOC_Os09g31080
Os.53679.1.S1_s_at--506--8551Chr09:18685446..18685470 (25 bp)
TGGAGTACATGCATGGCCCGCGCGC
LOC_Os09g31080
Os.53679.1.S1_s_at--103--5711Chr09:18685486..18685510 (25 bp)
GACTCGCCGGAGTTGTACGTACGTG
LOC_Os09g31080
Os.53679.1.S1_s_at--104--10771Chr09:18685498..18685522 (25 bp)
TTGTACGTACGTGTGCGTGTAGCGA
LOC_Os09g31080
Os.53679.1.S1_s_at--1019--1071Chr09:18685544..18685568 (25 bp)
AGTGGTAGTACTCGACTCCGTAGGT
LOC_Os09g31080
Os.53679.1.S1_s_at--388--9912Chr09:18685552..18685576 (25 bp)
TACTCGACTCCGTAGGTGTGTGTGG
LOC_Os09g31080
Os.53679.1.S1_s_at--1005--9631Chr09:18685636..18685660 (25 bp)
TCAGTGACGCGGTGCCCCTCTCTGG
LOC_Os09g31080
Os.53679.1.S1_s_at--896--591Chr09:18685668..18685692 (25 bp)
ATGCCTCCGTCGTCGCAGGCGTTGT
LOC_Os09g31080
Os.53679.1.S1_s_at--790--4991Chr09:18685682..18685706 (25 bp)
GCAGGCGTTGTTTGTCGGTCTTTTG
LOC_Os09g31080
Os.53679.1.S1_s_at--1037--6851Chr09:18685724..18685748 (25 bp)
GTTTGATTGGTTTTCATCGTGTAAT
LOC_Os09g31080
Os.53679.1.S1_s_at--87--491Chr09:18685739..18685763 (25 bp)
ATCGTGTAATGGGTGCGTTTCTGAG
LOC_Os09g31080
Target Sequence 
CGTCGTCGTACACCGTGGAGTACATGCATGGCCCGCGCGCGCCGCCGCCGCCGGCGACTCGCCGGAGTTGTACGTACGTG
TGCGTGTAGCGAGTGATGAGTTGAGTGAGCTGGAGTGGTAGTACTCGACTCCGTAGGTGTGTGTGGGTACGCGTGACGTG
GGGCTAAATAAAAGAGTTTGTCATCGAGGGCGGTGGGGCCCAGCGTCAGTGACGCGGTGCCCCTCTCTGGCCCCCACATG
CCTCCGTCGTCGCAGGCGTTGTTTGTCGGTCTTTTGTGCTTTTTTTTTTTCGTGTTTGATTGGTTTTCATCGTGTAATGG
GTGCGTTTCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53679.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis