Browse Element(s) Details


Os.54115.1.S1_at

Description gb:AK102037.1
DB_XREF= gi:32987246
TID=Os.54115.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033081D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033081D06, full insert sequence.
FL= gb:AK102037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5003011/11Phosphoethanolamine N-methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49970Os.28943.1.S1_x_at2/111+29041155..29044380retrotransposon protein, putative, unclassified
LOC_Os01g49980NANA1+29045003..29050232retrotransposon protein, putative, unclassified
LOC_Os01g49990Os.47130.4.A1_x_at1/111+29050955..29051287retrotransposon protein, putative, unclassified
LOC_Os01g50000Os.56113.1.S1_at10/111+29053436..29054074expressed protein
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein
LOC_Os01g50030Os.27943.1.S1_s_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.54115.1.S1_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.27943.1.S1_a_at10/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50060Os.41638.1.S1_at10/111+29083276..29086090expressed protein
LOC_Os01g50070NANA1+29095823..29096273multidrug resistance protein 1 homolog, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006656biological_processphosphatidylcholine biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0000234molecular_functionphosphoethanolamine N-methyltransferase activity
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54115.1.S1_at--66--8551Chr01:29070969..29070993 (25 bp)
TGGAGCTACACTGGCTGCATTCCCA
LOC_Os01g50030
Os.54115.1.S1_at--362--3591Chr01:29070986..29071010 (25 bp)
CATTCCCATATTCTCTTCAACTGAA
LOC_Os01g50030
Os.54115.1.S1_at--91--6511Chr01:29071016..29071040 (25 bp)
GATATGATTTTCTGTGGTACTGATC
LOC_Os01g50030
Os.54115.1.S1_at--333--7511Chr01:29071029..29071053 (25 bp)
GTGGTACTGATCATATTCAATCTTG
LOC_Os01g50030
Os.54115.1.S1_at--520--10511Chr01:29071044..29071068 (25 bp)
TTCAATCTTGTATTGCAGTTCCTCG
LOC_Os01g50030
Os.54115.1.S1_at--542--6531Chr01:29071125..29071149 (25 bp)
GATTTCAGCCAGGTAATTTAGGCAA
LOC_Os01g50030
Os.54115.1.S1_at--980--2371Chr01:29071149..29071173 (25 bp)
AAACTGCGAGTTTAGTAGCTGCCTT
LOC_Os01g50030
Os.54115.1.S1_at--614--4051Chr01:29071155..29071179 (25 bp)
CGAGTTTAGTAGCTGCCTTCTTTCC
LOC_Os01g50030
Os.54115.1.S1_at--30--3651Chr01:29071171..29071195 (25 bp)
CTTCTTTCCATGTTGCTGGTATGCA
LOC_Os01g50030
Os.54115.1.S1_at--952--4711Chr01:29071185..29071209 (25 bp)
GCTGGTATGCACATCAAATTCTTTG
LOC_Os01g50030
Os.54115.1.S1_at--315--3691Chr01:29071205..29071229 (25 bp)
CTTTGTTTCACTTATTTTCAGGAGG
LOC_Os01g50030
Target Sequence 
TGGAGCTACACTGGCTGCATTCCCATATTCTCTTCAACTGAAATGTAGATATGATTTTCTGTGGTACTGATCATATTCAA
TCTTGTATTGCAGTTCCTCGATGTTCTAGAGAGGGAGCTTGCTAAAGTTGAAAAGAACAAAAACGAGTTCGTCTCTGATT
TCAGCCAGGTAATTTAGGCAAAACTGCGAGTTTAGTAGCTGCCTTCTTTCCATGTTGCTGGTATGCACATCAAATTCTTT
GTTTCACTTATTTTCAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis