Browse Element(s) Details


Os.54900.1.S1_at

Description gb:AK107053.1
DB_XREF= gi:32992262
TID=Os.54900.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54900 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-D04, full insert sequence.
FL= gb:AK107053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g669908/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66940Os.8324.1.S1_a_at11/111+39211672..39214569Fructokinase, putative, expressed
LOC_Os01g66950OsAffx.23949.1.S1_at7/111+39215654..39216094hypothetical protein
LOC_Os01g66960Os.7134.1.S1_at11/111+39218000..3922049915 kDa selenoprotein precursor, putative, expressed
LOC_Os01g66970Os.25849.1.S1_x_at11/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.25849.3.S1_x_at10/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66970Os.46596.1.S1_at8/111+39220417..39224280Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g66980Os.7137.2.S1_x_at11/111+39227400..39229574expressed protein
LOC_Os01g66980Os.7137.1.S1_at11/111+39227400..39229574expressed protein
LOC_Os01g66990OsAffx.23950.1.S1_at10/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.54900.1.S1_at8/111+39230858..39236447hypothetical protein
LOC_Os01g66990Os.14145.1.A1_at1/111+39230858..39236447hypothetical protein
LOC_Os01g67000Os.6371.1.S1_at11/111+39237841..39242341membrane-associated 30 kDa protein, chloroplast precursor, putative, expressed
LOC_Os01g67010Os.37622.1.S1_at11/111+39242941..39244776expressed protein
LOC_Os01g67030Os.36346.2.S1_at11/111+39251649..39253226membrane protein, putative, expressed
LOC_Os01g67040Os.36346.1.S1_a_at11/111+39255490..39256900rhomboid family protein, putative, expressed
LOC_Os01g67054Os.9213.1.S1_a_at11/111+39257230..39261599Calreticulin precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54900.1.S1_at--936--911Chr01:39236488..39236512 (25 bp)
AGGCTAGCTACTTCGCATTCAGTTT
NONE
Os.54900.1.S1_at--701--5971Chr01:39236450..39236474 (25 bp)
GAGACAGCTTCTTGGATCGTATCGG
NONE
Os.54900.1.S1_at--1005--6391Chr01:39236436..39236460 (25 bp)
GATCGTATCGGCCATGGGCTCTCAC
NONE
Os.54900.1.S1_at--359--8471Chr01:39236217..39236241 (25 bp)
TGGCGCGGGACACTGATCAACTCAT
LOC_Os01g66990
Os.54900.1.S1_at--293--9711Chr01:39236201..39236225 (25 bp)
TCAACTCATCCACGCGCAGATAGAT
LOC_Os01g66990
Os.54900.1.S1_at--626--5411Chr01:39236172..39236196 (25 bp)
GAAGCGATCGACGAGATGTCTCCGA
LOC_Os01g66990
Os.54900.1.S1_at--967--7151Chr01:39236155..39236179 (25 bp)
GTCTCCGAGCGATTTTTGTAGCTGT
LOC_Os01g66990
Os.54900.1.S1_at--758--10311Chr01:39236124..39236148 (25 bp)
TTTCTTCTTAATTTACGACACCATT
LOC_Os01g66990
Os.54900.1.S1_at--52--7891Chr01:39236072..39236096 (25 bp)
GGTTATGTGATCTGTAGCCTCTGAA
LOC_Os01g66990
Os.54900.1.S1_at--771--6971Chr01:39236059..39236083 (25 bp)
GTAGCCTCTGAACATTTGTGTACAT
LOC_Os01g66990
Os.54900.1.S1_at--812--2231Chr01:39236014..39236038 (25 bp)
AAATTAAGCTACTGATGATCGGTGC
LOC_Os01g66990
Target Sequence 
AGGCTAGCTACTTCGCATTCAGTTTCAGTTTCAGAGAAGAGACAGCTTCTTGGATCGTATCGGCCATGGGCTCTCACCTG
CACCGTGACTTGCTGCTCGCCGTCGTTCTCGCGGCGATCGCCGCCGCGAGCCTCGCCGGACGCGCCGACGCCGCGAGGCC
ATTGCCGCCGAGCCCCGCGTTGCCGTCGCCGTCGTCGTCGTCGGCGTTGGAGGCGGCCAAGGCGGCGGTGTCGACGCTGA
TGGAGATGCTGCCATCGGGGCCCAGCGCAGGTGGCGCGGGACACTGATCAACTCATCCACGCGCAGATAGATTCAAGAAG
CGATCGACGAGATGTCTCCGAGCGATTTTTGTAGCTGTTTTTTTTTTCTTCTTAATTTACGACACCATTTTTTTTTCTTC
CTTCTATAGATGGATAGGTTATGTGATCTGTAGCCTCTGAACATTTGTGTACATAAAGATGAACACAACGTGAGAAATTA
AGCTACTGATGATCGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis