Browse Element(s) Details


Os.55000.1.S1_x_at

Description gb:AK107280.1
DB_XREF= gi:32992489
TID=Os.55000.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55000 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-A11, full insert sequence.
FL= gb:AK107280.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g530701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53050OsAffx.30177.1.S1_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050OsAffx.30177.1.S1_x_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050Os.37971.1.A1_at1/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53060OsAffx.14390.1.S1_at11/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53060OsAffx.26587.1.S1_x_at2/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53070OsAffx.26585.1.S1_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070OsAffx.26585.1.S1_s_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070Os.55000.1.S1_x_at1/114+31390439..31391773hypothetical protein
LOC_Os04g53080OsAffx.26586.1.S1_at8/114+31394274..31394633hypothetical protein
LOC_Os04g53090Os.38395.3.S1_x_at11/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.2.S1_x_at9/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.4.S1_x_at5/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.1.S1_at1/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53110OsAffx.14392.1.S1_at10/114+31410130..31414368hypothetical protein
LOC_Os04g53110Os.52574.2.S1_x_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53110OsAffx.28164.2.S1_at1/114+31410130..31414368hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55000.1.S1_x_at--525--991NONE
AGGAGGACAACGCACGTCTGCGCAA
NONE
Os.55000.1.S1_x_at--720--7171NONE
GTCTGCGCAACCTCGTCGACAAGGC
NONE
Os.55000.1.S1_x_at--6--10031NONE
TAGACCCGCGCATCAAGCAGTTCAA
NONE
Os.55000.1.S1_x_at--860--371NONE
ATCAAGCAGTTCAAGGCCGACGACA
NONE
Os.55000.1.S1_x_at--546--1471Chr04:31390614..31391057 (25 bp)
AGAAGGCGCTCAACAAGCTCATCAC
LOC_Os04g53070
Os.55000.1.S1_x_at--582--1551NONE
AGCTCATCACCGACAACAACTACTT
NONE
Os.55000.1.S1_x_at--1053--371NONE
ATCACCGACAACAACTACTTCCAGT
NONE
Os.55000.1.S1_x_at--854--2591NONE
AACGAGCTCGATGCACTCTGCGAAA
NONE
Os.55000.1.S1_x_at--304--5111NONE
GCACTCTGCGAAAAGCTCGAGGCCA
NONE
Os.55000.1.S1_x_at--1111--2911NONE
AAGGACGCTGGCATCGCCACCTCTG
NONE
Os.55000.1.S1_x_at--1019--51NONE
ATTGACTTTGCAATCCACACTGTGT
NONE
Target Sequence 
AGGAGGACAACGCACGTCTGCGCAACCTCGTCGACAAGGCGCTCTCCGTAGACCCGCGCATCAAGCAGTTCAAGGCCGAC
GACAAGGCGGCGCGCGAGGCCAAGAAGAACAAGGGCCGTCCCGGCGTCAACGGCGCCGCTGCCGTCGACCCGCGCAAGGC
GGCCGAGGACAAGAAGAAGGCCGAGGAGGAGGCCAAGCGCAAGGCCGATGAAGAGGCCAAGGCCGCCGAGCAGGAGAAGT
CGGCCAAGGCCGACGCCAAAAAGGCAAAGGAGGCCGCCAAGAAGGCCATCAAGAAGGAGAAGAAGGCGCTCAACAAGCTC
ATCACCGACAACAACTACTTCCAGTCCGCCGCACCCACCCCGGCCGTCATCGAGGCCCAGCTCAACGAGCTCGATGCACT
CTGCGAAAAGCTCGAGGCCACCAAGCTCGCCGACTACAGGAAGAAGGCCGAGGCTGCCTCGGGCGCCGACGCCATCAAGG
CCGAGTTTGTCAACGCCGCCAAGGACGCTGGCATCGCCACCTCTGCTTTCGCCTGATCCCCTTTCCCCCCCTTAGACTTG
ATTGACTTTGCAATCCACACTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55000.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis