Browse Element(s) Details


Os.56161.1.S1_at

Description gb:AK109508.1
DB_XREF= gi:32994717
TID=Os.56161.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-G10, full insert sequence.
FL= gb:AK109508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3916011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39090OsAffx.25428.1.S1_at10/113+21679056..21680225hypothetical protein
LOC_Os03g39100OsAffx.13243.2.S1_at11/113+21680788..21682290No apical meristem protein
LOC_Os03g39100OsAffx.13243.1.S1_at2/113+21680788..21682290No apical meristem protein
LOC_Os03g39110OsAffx.26598.2.S1_x_at9/113+21682968..21685277expressed protein
LOC_Os03g39110Os.27372.1.A1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110OsAffx.26598.2.S1_at6/113+21682968..21685277expressed protein
LOC_Os03g39110Os.21300.2.S1_x_at1/113+21682968..21685277expressed protein
LOC_Os03g39129Os.48549.1.A1_at11/113+21687636..21692645expressed protein
LOC_Os03g39150OsAffx.25429.1.S1_at11/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.1.S1_a_at2/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39150Os.17761.2.S1_x_at1/113+21700679..21701734Protein kinase domain containing protein
LOC_Os03g39160Os.56161.1.S1_at11/113+21703226..21706316expressed protein
LOC_Os03g39170OsAffx.13245.1.S1_x_at11/113+21711489..21713402expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_at11/113+21716076..21718606expressed protein
LOC_Os03g39180OsAffx.3442.1.S1_s_at11/113+21716076..21718606expressed protein
LOC_Os03g39190OsAffx.26000.2.S1_at11/113+21719573..21720901hypothetical protein
LOC_Os03g39190OsAffx.26000.1.S1_at1/113+21719573..21720901hypothetical protein
LOC_Os03g39200OsAffx.28610.2.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.21756.5.A1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200OsAffx.13247.1.S1_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39200Os.7307.3.S1_x_at1/113+21722684..21723980hypothetical protein
LOC_Os03g39210NANA3+21729961..21734030retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56161.1.S1_at--656--931Chr03:21705748..21705772 (25 bp)
AGGCAGAAATTACCCAGCTGTTGCA
LOC_Os03g39160
Os.56161.1.S1_at--60--5491Chr03:21705804..21705828 (25 bp)
GAACTTCCTTCTGATACTTCTAGTC
LOC_Os03g39160
Os.56161.1.S1_at--353--751Chr03:21705849..21705873 (25 bp)
ATGTCGCAAGAGAAGCACCACTGGC
LOC_Os03g39160
Os.56161.1.S1_at--570--7891Chr03:21706068..21706092 (25 bp)
GGTTCATTTACCAATTCTCAAAGCT
LOC_Os03g39160
Os.56161.1.S1_at--605--7111Chr03:21706095..21706119 (25 bp)
GTCAGATCAGAAATTCACCACCACC
LOC_Os03g39160
Os.56161.1.S1_at--159--3751Chr03:21706119..21706143 (25 bp)
CTCAGCCAGCATTTTTCAGGAACTA
LOC_Os03g39160
Os.56161.1.S1_at--352--951Chr03:21706145..21706169 (25 bp)
AGGAACACCTGTTGCACCATATACA
LOC_Os03g39160
Os.56161.1.S1_at--847--1731Chr03:21706160..21706184 (25 bp)
ACCATATACACCTGTTGCACCATAT
LOC_Os03g39160
Os.56161.1.S1_at--522--6671Chr03:21706173..21706197 (25 bp)
GTTGCACCATATACCGGACCTTTTT
LOC_Os03g39160
Os.56161.1.S1_at--929--351Chr03:21706216..21706240 (25 bp)
ATAATGGACCGGGTTCATCCTGCCT
LOC_Os03g39160
Os.56161.1.S1_at--179--10551Chr03:21706229..21706253 (25 bp)
TTCATCCTGCCTACATTCAACTATT
LOC_Os03g39160
Target Sequence 
AGGCAGAAATTACCCAGCTGTTGCATAAATATGCAAACAAGAGGCACAGCCTAGAAGAACTTCCTTCTGATACTTCTAGT
CCACATCAGAAACATCACCAAATGTCGCAAGAGAAGCACCACTGGCAGCAAAAGCATCGAGAGGAACAACAGCAGCAGTT
TCAAAATCAATCCAAGGAACAAGAACAAGAGAGAAGGATGCAAAAGTTACGAGAGCTGAGGAAAAAGAAAAACAAGAGAA
CTCAGCGCAGGAAGCGGAAGCAAAATGCACAAGTGATGAAGCAGCATCAATTTGAGAAACAGCGAAAACTATATCACGCT
GGTTCATTTACCAATTCTCAAAGCTATGTCAGATCAGAAATTCACCACCACCTCAGCCAGCATTTTTCAGGAACTATAGG
AACACCTGTTGCACCATATACACCTGTTGCACCATATACCGGACCTTTTTGGTAGCTAGGGTCCATATATAATGGACCGG
GTTCATCCTGCCTACATTCAACTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis