Browse Element(s) Details


Os.56224.1.S1_at

Description gb:AK109646.1
DB_XREF= gi:32994855
TID=Os.56224.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56224 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-H09, full insert sequence.
FL= gb:AK109646.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0201011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01960Os.6597.1.S1_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01960Os.6597.2.S1_x_at11/111+510696..519250Paired amphipathic helix repeat family protein, expressed
LOC_Os01g01970OsAffx.23086.1.S1_s_at11/111+521602..524804expressed protein
LOC_Os01g01970OsAffx.23086.1.S1_at8/111+521602..524804expressed protein
LOC_Os01g01970Os.22967.1.S1_s_at1/111+521602..524804expressed protein
LOC_Os01g01980OsAffx.23087.1.S1_at11/111+526169..526810hypothetical protein
LOC_Os01g01990OsAffx.10875.1.S1_at11/111+530588..530941expressed protein
LOC_Os01g02000OsAffx.23051.2.S1_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02000OsAffx.23051.1.S1_x_at11/111+534589..540131EXS family protein, expressed
LOC_Os01g02010Os.56224.1.S1_at11/111+540227..541297expressed protein
LOC_Os01g02020Os.1637.1.S1_at10/111+545947..549427acetyl-CoA acetyltransferase, cytosolic 2, putative, expressed
LOC_Os01g02040Os.11832.1.S1_at11/111+550827..554817transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g02050Os.49998.1.S1_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed
LOC_Os01g02050Os.33406.1.A1_x_at11/111+558890..568894Phosphoenolpyruvate carboxylase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56224.1.S1_at--324--4691Chr01:540748..540772 (25 bp)
GCGGAGGCTCCGACCAAGAGCAAGA
LOC_Os01g02010
Os.56224.1.S1_at--894--3391Chr01:540478..540618 (25 bp)
CAGCATTCGATCTCAATGGAAGCAA
LOC_Os01g02010
Os.56224.1.S1_at--1080--8171Chr01:540461..540485 (25 bp)
GGAAGCAACAGGCAGTACGGACAAT
LOC_Os01g02010
Os.56224.1.S1_at--477--7871Chr01:540433..540457 (25 bp)
GGTTTGTCCTTCAGACTGTCATGGC
LOC_Os01g02010
Os.56224.1.S1_at--564--10011Chr01:540391..540415 (25 bp)
TAGCATGGTGATTAAAGCCCAGACC
LOC_Os01g02010
Os.56224.1.S1_at--408--9831Chr01:540379..540403 (25 bp)
TAAAGCCCAGACCAGACAGATCCAT
LOC_Os01g02010
Os.56224.1.S1_at--410--7171Chr01:540340..540364 (25 bp)
GTCTGCCTCGCCATTAATTTGATTA
LOC_Os01g02010
Os.56224.1.S1_at--21--10511Chr01:540327..540351 (25 bp)
TTAATTTGATTATTTCTGCCCTTGA
LOC_Os01g02010
Os.56224.1.S1_at--1023--4171Chr01:540309..540333 (25 bp)
CCCTTGATCTTGTTGTGTATGAGCA
LOC_Os01g02010
Os.56224.1.S1_at--92--8911Chr01:540290..540314 (25 bp)
TGAGCACTAGATTTGTCATAGGAAT
LOC_Os01g02010
Os.56224.1.S1_at--443--5251Chr01:540269..540293 (25 bp)
GAATCATCTTCTTGCTGGCTTGTAA
LOC_Os01g02010
Target Sequence 
GCGGAGGCTCCGACCAAGAGCAAGAACAAGCACAGGAAGAAGAACAAGCGCGGCAAGAAGGCCTCCGCGCCCGCGCCGGA
GCCGTTGAGCCCACCGGCGCCGGCCGCGCTGTCGCCCGCCGACAACCAGGCCGACGTGTCCGGCCCAGCACCATCAGCAT
TCGATCTCAATGGAAGCAACAGGCAGTACGGACAATGGGGGTTTGTCCTTCAGACTGTCATGGCTGCACTGCTACTATCA
TTAGCATGGTGATTAAAGCCCAGACCAGACAGATCCATCCATCCATCCATGTGTCTGCCTCGCCATTAATTTGATTATTT
CTGCCCTTGATCTTGTTGTGTATGAGCACTAGATTTGTCATAGGAATCATCTTCTTGCTGGCTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56224.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis