Browse Element(s) Details

Os.56251.1.S1_x_at

Description

gb:AK109692.1
DB_XREF= gi:32994901
TID=Os.56251.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-E07, full insert sequence.
FL= gb:AK109692.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g37790	11/11	D-mannose binding lectin family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g37750	OsAffx.18036.1.S1_at	11/11	9	+	21747269..21747688	hypothetical protein
LOC_Os09g37760	Os.26925.1.S1_at	11/11	9	+	21751269..21757050	Bromodomain containing protein, expressed
LOC_Os09g37770	OsAffx.6509.1.S1_at	11/11	9	+	21759179..21759571	hypothetical protein
LOC_Os09g37780	OsAffx.30177.3.S1_at	11/11	9	+	21761277..21764879	D-mannose binding lectin family protein
LOC_Os09g37790	Os.49232.1.S1_x_at	11/11	9	+	21772267..21777539	D-mannose binding lectin family protein, expressed
LOC_Os09g37790	Os.56251.1.S1_x_at	11/11	9	+	21772267..21777539	D-mannose binding lectin family protein, expressed
LOC_Os09g37790	OsAffx.23910.2.A1_at	6/11	9	+	21772267..21777539	D-mannose binding lectin family protein, expressed
LOC_Os09g37790	Os.45982.1.A1_at	1/11	9	+	21772267..21777539	D-mannose binding lectin family protein, expressed
LOC_Os09g37790	OsAffx.18435.1.S1_x_at	1/11	9	+	21772267..21777539	D-mannose binding lectin family protein, expressed
LOC_Os09g37800	OsAffx.6510.1.S1_at	11/11	9	+	21778729..21782005	D-mannose binding lectin family protein
LOC_Os09g37810	OsAffx.6511.1.S1_at	11/11	9	+	21782574..21784157	D-mannose binding lectin family protein
LOC_Os09g37820	Os.35344.18.S1_x_at	10/11	9	+	21785250..21790320	transposon protein, putative, Mutator sub-class
LOC_Os09g37820	Os.35344.3.S1_x_at	10/11	9	+	21785250..21790320	transposon protein, putative, Mutator sub-class
LOC_Os09g37820	OsAffx.22940.5.S1_x_at	2/11	9	+	21785250..21790320	transposon protein, putative, Mutator sub-class
LOC_Os09g37830	OsAffx.30178.1.S1_at	11/11	9	+	21795432..21796306	hypothetical protein
LOC_Os09g37840	OsAffx.30180.4.S1_at	11/11	9	+	21797604..21819928	D-mannose binding lectin family protein
LOC_Os09g37840	OsAffx.18038.1.S1_at	11/11	9	+	21797604..21819928	D-mannose binding lectin family protein
LOC_Os09g37840	OsAffx.30180.4.S1_x_at	11/11	9	+	21797604..21819928	D-mannose binding lectin family protein
LOC_Os09g37840	OsAffx.30180.2.S1_at	1/11	9	+	21797604..21819928	D-mannose binding lectin family protein
LOC_Os09g37840	OsAffx.30180.1.S1_at	1/11	9	+	21797604..21819928	D-mannose binding lectin family protein
LOC_Os09g37840	OsAffx.30180.3.S1_at	1/11	9	+	21797604..21819928	D-mannose binding lectin family protein
LOC_Os09g37840	Os.10719.1.S1_at	1/11	9	+	21797604..21819928	D-mannose binding lectin family protein

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Gene Ontology Classification

GO id	Type	Name
GO:0004672	molecular_function	protein kinase activity
GO:0004675	molecular_function	transmembrane receptor protein serine/threonine kinase activity
GO:0016301	molecular_function	kinase activity
GO:0030246	molecular_function	carbohydrate binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.56251.1.S1_x_at--887--463	1	Chr09:21772930..21772954 (25 bp)	GCGTTCGGCTACTGCGGCAACAGCA	LOC_Os09g37790
Os.56251.1.S1_x_at--368--401	1	Chr09:21772869..21772893 (25 bp)	CGTGCCACTGCCTCGAAGGGTTCGA	LOC_Os09g37790
Os.56251.1.S1_x_at--1128--789	1	Chr09:21772764..21772788 (25 bp)	GGTTCGCGGAGTTCCCGGACATGAA	LOC_Os09g37790
Os.56251.1.S1_x_at--1007--813	1	Chr09:21772748..21772772 (25 bp)	GGACATGAAGCTGCCCGACGGGTAC	LOC_Os09g37790
Os.56251.1.S1_x_at--664--783	1	Chr09:21772728..21772752 (25 bp)	GGTACGCGCTCGTCGGGAACATGAA	LOC_Os09g37790
Os.56251.1.S1_x_at--945--133	1	Chr09:21772621..21772645 (25 bp)	AGAGATCCGACCAGGTGTTTGATGT	LOC_Os09g37790
Os.56251.1.S1_x_at--203--977	1	Chr09:21772546..21772570 (25 bp)	TTAGGCGAGACGCTGTACCTCCGAA	LOC_Os09g37790
Os.56251.1.S1_x_at--1121--697	1	Chr09:21772532..21772556 (25 bp)	GTACCTCCGAATGGCAGGTGCAGGT	LOC_Os09g37790
Os.56251.1.S1_x_at--73--121	1	Chr09:21772343..21772367 (25 bp)	AGTATTCTTATACCCACATGCATCC	LOC_Os09g37790
Os.56251.1.S1_x_at--111--65	1	Chr09:21772326..21772350 (25 bp)	ATGCATCCTCATATGTGTTCCCAAG	LOC_Os09g37790
Os.56251.1.S1_x_at--1132--1063	2	Chr09:21772309..21772333 (25 bp)	TTCCCAAGTTCAAAGGTACATATAT	LOC_Os09g37790

Target Sequence

GCGTTCGGCTACTGCGGCAACAGCACCGGCGGCGGCGGCGGCGCCGGCGGCGGCGTCTCGACGTGCCACTGCCTCGAAGG
GTTCGAGCCGGCGAGCGGCGCCGACTGGAGCCGCGGCGACTTCTCGCTGGGGTGTCGCCGGAAGGAGGCGGCGCGCTGCG
GCGACGGGTTCGCGGAGTTCCCGGACATGAAGCTGCCCGACGGGTACGCGCTCGTCGGGAACATGAACGCCGGCGAGTGC
GCGGCGGCGTGCCGCCGCAACTGCTCCTGCGTGGCGTACGCCTACGCCGACCTGAGCAGGAGCACGAGGAGAGATCCGAC
CAGGTGTTTGATGTGGGGCGGCGAGCTGCTCGACATGGAGAAGGTGAACGAGAGCTGGGGTGACTTAGGCGAGACGCTGT
ACCTCCGAATGGCAGGTGCAGGTAGGGGGTCAAAAAGAAGTGCAGTGAAATTTGCACTTCCAATAGTGTTGGCAAGTATT
CTTATACCCACATGCATCCTCATATGTGTTCCCAAGTTCAAAGGTACATATAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis