Browse Element(s) Details


Os.6016.1.A1_s_at

Description gb:CB682631
DB_XREF= gi:29686356
DB_XREF=OSJNEf10C20.r
CLONE=OSJNEf10C20
TID=Os.6016.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.6016 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3781011/11expressed protein
LOC_Os11g268201/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37780Os.21267.1.S1_at10/118+23794065..23801478NOL1/NOP2/sun family protein, expressed
LOC_Os08g37790Os.7759.1.S1_at10/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37790OsAffx.14941.4.S1_s_at1/118+23802017..23806045Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor, putative, expressed
LOC_Os08g37800Os.338.1.S2_a_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.4.S1_s_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.2.S1_x_at11/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S2_x_at9/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.1.S1_x_at7/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37800Os.338.3.S1_x_at6/118+23809394..23814568Carbon catabolite derepressing protein kinase, putative, expressed
LOC_Os08g37810Os.6016.1.A1_s_at11/118+23818520..23820148expressed protein
LOC_Os08g37810Os.6016.1.A1_at11/118+23818520..23820148expressed protein
LOC_Os08g37820Os.15847.1.A1_at11/118+23824209..23828119expressed protein
LOC_Os08g37820OsAffx.17386.1.S1_at11/118+23824209..23828119expressed protein
LOC_Os08g37830OsAffx.6061.1.S1_at11/118+23835658..23836080hypothetical protein
LOC_Os08g37840Os.14366.1.S1_s_at11/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37840Os.14366.1.S1_at10/118+23836502..23837787Phosphate-induced protein 1 conserved region containing protein, expressed
LOC_Os08g37850OsAffx.27865.1.S1_x_at4/118+23843981..23846807transposon protein, putative, Pong sub-class

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Gene Ontology Classification
GO idTypeName
GO:0008652biological_processamino acid biosynthesis
GO:0045449biological_processregulation of transcription
GO:0005737cellular_componentcytoplasm
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6016.1.A1_s_at--845--6131Chr08:23819548..23819572 (25 bp)
GAGGGTCCCCTACGAGGCATTTCAA
LOC_Os08g37810
Os.6016.1.A1_s_at--1027--5351Chr08:23819603..23819627 (25 bp)
GAAGAGGAGCCACCTCCGGTAGCAA
LOC_Os08g37810
Os.6016.1.A1_s_at--216--1591Chr08:23819655..23819679 (25 bp)
AGCTCTCCGCTGTGCTAAGGGATTT
LOC_Os08g37810
Os.6016.1.A1_s_at--903--8511Chr08:23819744..23819768 (25 bp)
TGGAAGGAAACCGAGGCCCGCCACA
LOC_Os08g37810
Os.6016.1.A1_s_at--820--891Chr08:23819757..23819781 (25 bp)
AGGCCCGCCACAACAGGATGCTTCT
LOC_Os08g37810
Os.6016.1.A1_s_at--983--7471Chr08:23819855..23819879 (25 bp)
GGCGGAGACGGCTCGTAACAAACCA
LOC_Os08g37810
Os.6016.1.A1_s_at--223--8331Chr08:23819864..23819888 (25 bp)
GGCTCGTAACAAACCAGCAGCTGAT
LOC_Os08g37810
Os.6016.1.A1_s_at--15--4772Chr11:14900534..14900583 (24 bp)
GCTGCTTAGCTTAATTTGGTGGTGT
LOC_Os11g26820
Os.6016.1.A1_s_at--945--7711Chr08:23819956..23819980 (25 bp)
GGGTGTCTCCTAGTATGTTCAGGAT
LOC_Os08g37810
Os.6016.1.A1_s_at--591--10531Chr08:23819973..23819997 (25 bp)
TTCAGGATGCATTCAGTAGCAGGAT
LOC_Os08g37810
Os.6016.1.A1_s_at--881--10331Chr08:23820001..23820025 (25 bp)
TTTATCAGGCTGTACTTATCGTTAG
LOC_Os08g37810
Target Sequence 
GAGGGTCCCCTACGAGGCATTTCAAGCCAAGGTCGCCATGGCAGACAAGGTGAAGGAAGAGGAGCCACCTCCGGTAGCAA
CCCGCCCCGGGGGGGGTACCAACGAGCAGCTCTCCGCTGTGCTAAGGGATTTCGGCCAGGGGATCATGCGGCTCGAGAGG
CGGCGCATGGAGATGCAGTGGGAGATCGATCGTGGGTGGAAGGAAACCGAGGCCCGCCACAACAGGATGCTTCTTGATGC
TCAGCGCCACCTCCACGAGGCTCTCGCCGCCACGCCGCCGCCCCTCAAGAAGGCCAGGAGGGAGCACGGCGGAGACGGCT
CGTAACAAACCAGCAGCTGATTGTTGCAGCTGATTGTTGCGGACTTGCAGCTGCTTAGCTTAATTTGGTGGTGTGATGGT
GAGTGAGGGGGTGTCTCCTAGTATGTTCAGGATGCATTCAGTAGCAGGATGTATTTATCAGGCTGTACTTATCGTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6016.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis