Browse Element(s) Details


Os.6110.1.S1_at

Description gb:BX927652
DB_XREF= gi:41881910
DB_XREF=BX927652
CLONE=p515h07p5
TID=Os.6110.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.6110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458E05.7 (P0458E05.7), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7342011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73370OsAffx.21929.1.S1_at11/111+42853759..42854229LRK14, putative
LOC_Os01g73370OsAffx.21929.1.S1_x_at10/111+42853759..42854229LRK14, putative
LOC_Os01g73380OsAffx.30226.2.S1_s_at7/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_x_at5/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.24587.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.442.1.S1_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_x_at3/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.2.S1_x_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.1.S1_at2/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.30226.4.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73380OsAffx.19052.1.S1_at1/111+42854725..42858693retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g73390OsAffx.24027.1.S1_at11/111+42859099..42860801hypothetical protein
LOC_Os01g73400OsAffx.24028.1.S1_at11/111+42864536..42864797hypothetical protein
LOC_Os01g73410Os.31375.1.S2_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73410Os.31375.1.S1_at11/111+42868178..42873927Chromosome condensation factor, putative, expressed
LOC_Os01g73420Os.6110.1.S1_at11/111+42874549..42875838Mitochondrial carrier protein, expressed
LOC_Os01g73430OsAffx.24029.2.S1_x_at11/111+42876691..42883710RNA polymerase Rpb1, domain 2 family protein
LOC_Os01g73440OsAffx.24030.1.S1_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73440OsAffx.24030.1.S1_x_at11/111+42885896..42886801hypothetical protein
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6110.1.S1_at--513--10631Chr01:42875248..42875272 (25 bp)
TTCGAGTACCTCAAGGCATTCACCC
LOC_Os01g73420
Os.6110.1.S1_at--150--1071Chr01:42875491..42875515 (25 bp)
AGGGTGCTGCACAGCGCTTGCTTCG
LOC_Os01g73420
Os.6110.1.S1_at--690--7951Chr01:42875524..42875548 (25 bp)
GGATACTGCGCCTTCGAGACGGCGA
LOC_Os01g73420
Os.6110.1.S1_at--239--6211Chr01:42875547..42875571 (25 bp)
GAGGCTTGCGATTCTCAAATGGTAC
LOC_Os01g73420
Os.6110.1.S1_at--567--4571Chr01:42875621..42875645 (25 bp)
GCGCTGCTTGAGTTTGTGAGTGCTC
LOC_Os01g73420
Os.6110.1.S1_at--1054--8471Chr01:42875658..42875682 (25 bp)
TGGCTGTTGATTTTGCTCCCAATGA
LOC_Os01g73420
Os.6110.1.S1_at--86--6551Chr01:42875666..42875690 (25 bp)
GATTTTGCTCCCAATGATGCCATGA
LOC_Os01g73420
Os.6110.1.S1_at--1018--6351Chr01:42875681..42875705 (25 bp)
GATGCCATGACTGTCTCAGGAGTTT
LOC_Os01g73420
Os.6110.1.S1_at--1136--8031Chr01:42875699..42875723 (25 bp)
GGAGTTTTACTGTACCTACCTAGCT
LOC_Os01g73420
Os.6110.1.S1_at--339--1971Chr01:42875707..42875731 (25 bp)
ACTGTACCTACCTAGCTATGCTATG
LOC_Os01g73420
Os.6110.1.S1_at--824--10771Chr01:42875756..42875780 (25 bp)
TTGTTTGAAACTTAAGCATCCTTGA
LOC_Os01g73420
Target Sequence 
TTCGAGTACCTCAAGGCATTCACCCTCAAGCAACGCAACAAGGAGAGCCTCACGCCGGGAGAGAGTGTGCTGTGCGGCGC
TCTCGCGGGGGCCATATCGGCGGNCGCTCANNACCCCGNTCGACGTCGTCAAGACGCGCCTCATGACCAGNGTGGGCACC
GAGGGGNGCCGCACCGTGGTTGGGACAATGCGGGAGGTCGTCGCCGAGGAGGGGCTGATGGGCTTGTCCCGGGGGATTGG
TCCGAGGGTGCTGCACAGCGCTTGCTTCGCCGCGCTGGGATACTGCGCCTTCGAGACGGCGAGGCTTGCGATTCTCAAAT
GGTACATTGAAGACTGCGAGAGGAAGGCTGCAGCGGAGATGAAGGCTGGAGTAGGCGCTGCTTGAGTTTGTGAGTGCTCT
TTCAGGAAAGTTGGCTGTTGATTTTGCTCCCAATGATGCCATGACTGTCTCAGGAGTTTTACTGTACCTACCTAGCTATG
CTATGATGCAGATAATGCACCTGCTTAAATTGTTTGAAACTTAAGCATCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis