Browse Element(s) Details


Os.6227.1.S1_at

Description gb:AK107588.1
DB_XREF= gi:32992797
TID=Os.6227.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-A03, full insert sequence.
FL= gb:AK107588.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5815011/11expressed protein
LOC_Os06g326301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58180Os.51512.1.S1_at11/112+35603187..35604999expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6227.1.S1_at--803--6933Chr02:35581047..35581071 (25 bp)
GTAGTGGAGATCTTATCCCGTGGCT
LOC_Os02g58150
Os.6227.1.S1_at--862--1272Chr02:35581054..35581078 (25 bp)
AGATCTTATCCCGTGGCTGCTACGT
LOC_Os02g58150
Os.6227.1.S1_at--643--8472Chr02:35581067..35581091 (25 bp)
TGGCTGCTACGTTGCAACGGAATCT
LOC_Os02g58150
Os.6227.1.S1_at--363--2571Chr02:35581082..35581106 (25 bp)
AACGGAATCTCGTACGGTAGCTGCC
LOC_Os02g58150
Os.6227.1.S1_at--266--6971Chr02:35581098..35581122 (25 bp)
GTAGCTGCCCTCTTCCAAAAATAAG
LOC_Os02g58150
Os.6227.1.S1_at--174--1531Chr02:35581121..35581145 (25 bp)
AGCATTTTCTACGTAATTTAGTAAG
LOC_Os02g58150
Os.6227.1.S1_at--865--4451Chr02:35581173..35581197 (25 bp)
GCCTAGATGCATTTCCGAAGATTCG
LOC_Os02g58150
Os.6227.1.S1_at--973--4211Chr02:35581187..35581211 (25 bp)
CCGAAGATTCGGATTGGTTGAAAAT
LOC_Os02g58150
Os.6227.1.S1_at--40--2991Chr02:35581209..35581233 (25 bp)
AATGTGTGGATTTTCGTGTATTAAA
LOC_Os02g58150
Os.6227.1.S1_at--888--8731Chr02:35581239..35581263 (25 bp)
TGTACACATACATAGCAAGACGGTT
LOC_Os02g58150
Os.6227.1.S1_at--977--1471Chr02:35581252..35581276 (25 bp)
AGCAAGACGGTTACCATGGCATCAA
LOC_Os02g58150
Target Sequence 
GTAGTGGAGATCTTATCCCGTGGCTGCTACGTTGCAACGGAATCTCGTACGGTAGCTGCCCTCTTCCAAAAATAAGCATT
TTCTACGTAATTTAGTAAGGATTTGGTCAAAATTTGAATTTAAATNGCCTAGATGCATTTCCGAAGATTCGGATTGGTTG
AAAATGTGTGGATTTTCGTGTATTAAAATTGGTGTACACATACATAGCAAGACGGTTACCATGGCATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis