Browse Element(s) Details


Os.6369.1.S1_at

Description gb:AK064595.1
DB_XREF= gi:32974613
TID=Os.6369.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-G10, full insert sequence.
FL= gb:AK064595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0340011/11expressed protein
LOC_Os11g036306/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03340Os.27524.1.S1_at11/1112+1291701..1299940expressed protein
LOC_Os12g03340Os.27524.2.S1_x_at8/1112+1291701..1299940expressed protein
LOC_Os12g03350Os.50919.1.S1_at4/1112+1301340..1302288hypothetical protein
LOC_Os12g03360Os.50942.1.S1_at6/1112+1304139..1305879Nse1 non-SMC component of SMC5-6 complex family protein
LOC_Os12g03370Os.50598.1.S1_at11/1112+1308547..1309703Harpin-induced protein 1 containing protein, expressed
LOC_Os12g03380OsAffx.30177.4.S1_at11/1112+1313533..1314090expressed protein
LOC_Os12g03380OsAffx.30177.1.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.8747.3.S1_x_at2/1112+1313533..1314090expressed protein
LOC_Os12g03380Os.33750.2.S1_x_at1/1112+1313533..1314090expressed protein
LOC_Os12g03390OsAffx.31564.2.S1_at11/1112+1314753..1316248F-box domain containing protein, expressed
LOC_Os12g03400Os.6369.1.S1_at11/1112+1316605..1318869expressed protein
LOC_Os12g03410OsAffx.30800.1.S1_at11/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03410OsAffx.30800.2.S1_x_at2/1112+1319292..1325834Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g03420NANA12+1331912..1332472VQ motif family protein
LOC_Os12g03430OsAffx.19468.1.S1_s_at10/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.1.S1_at9/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03430OsAffx.19468.2.S1_at5/1112+1335826..1338425Mpv17/PMP22 family protein, expressed
LOC_Os12g03440Os.16604.1.S1_at11/1112+1341002..1343257F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6369.1.S1_at--339--3693Chr12:1321443..1321467 (25 bp)
CTTTGATGGTGTCATTTCCAAGCCA
NONE
Os.6369.1.S1_at--590--8771Chr12:1318442..1318466 (25 bp)
TGTTTTTAATCTTCAGGGCTGTTCA
LOC_Os12g03400
Os.6369.1.S1_at--444--4733Chr12:1321531..1321555 (25 bp)
GCTGTTCATAGGGATGGCTCGGATT
NONE
Os.6369.1.S1_at--437--6512Chr12:1318486..1318510 (25 bp)
GATATCCCTAAATACTGTCCATTGG
LOC_Os12g03400
Os.6369.1.S1_at--115--1973Chr12:1321571..1321595 (25 bp)
ACTGTCCATTGGTCTTCAAGGTTGA
NONE
Os.6369.1.S1_at--247--8013Chr12:1318530..1318554 (25 bp)
GGATGGCTCGTATCGTGTCTCTGAA
LOC_Os12g03400
Os.6369.1.S1_at--268--511Chr12:1318541..1318565 (25 bp)
ATCGTGTCTCTGAATATTGTCCATT
LOC_Os12g03400
Os.6369.1.S1_at--70--1372Chr12:1318596..1318620 (25 bp)
AGAGCTTAAACTTGGTGGCGCCCGT
LOC_Os12g03400
Os.6369.1.S1_at--864--4551Chr12:1318613..1318637 (25 bp)
GCGCCCGTGTACTGTTGAAGGTGTC
LOC_Os12g03400
Os.6369.1.S1_at--781--10631Chr12:1318787..1318811 (25 bp)
TTCGACAGGTGAAGGATGCCACACT
LOC_Os12g03400
Os.6369.1.S1_at--412--591Chr12:1318802..1318826 (25 bp)
ATGCCACACTCTTATCTGTTCTTAT
LOC_Os12g03400
Target Sequence 
CTTTGATGGTGTCATTTCCAAGCCATGTGACCTGAATAGGGTAGTTGCTGTGGTGGAGAATACACCTTTGTTTTTAATCT
TCAGGGCTGTTCATAGGGATGGCTCGGATTATGATATCCCTAAATACTGTCCATTGGTCTTCAAGGTTGATCAGGGGGAT
GGCTCGTATCGTGTCTCTGAATATTGTCCATTCAAAGCTAGAAGACATGGATATGACATGAAAGAGCTTAAACTTGGTGG
CGCCCGTGTACTGTTGAAGGTGTCTTGGTCAACTTTGAAGTGATTTTGAATATTCCTGGGGTATACATAATCTATGCTAA
GCAGAAATAGCGATATTTCTGTGTATTGACTAGTAGGCAAATGTTTGGGCCTTATTTTGAGTACATATTTAAGTTTTTTA
TTTGTTGTAGAAGTTCGACAGGTGAAGGATGCCACACTCTTATCTGTTCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis