Browse Element(s) Details


Os.6876.1.S1_at

Description gb:AK107879.1
DB_XREF= gi:32993088
TID=Os.6876.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.6876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-D04, full insert sequence.
FL= gb:AB116721.1 gb:AK107879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3895011/11Anthranilate synthase component II, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g38900Os.32013.1.S1_a_at11/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38900Os.32013.2.S1_at10/114+22897018..22898855SPFH domain/Band 7 family protein, expressed
LOC_Os04g38910Os.50356.1.A1_at11/114+22901114..22903620Protein kinase domain containing protein, expressed
LOC_Os04g38920OsAffx.26381.1.S1_at11/114+22909635..22910874expressed protein
LOC_Os04g38920OsAffx.8340.1.S1_at1/114+22909635..22910874expressed protein
LOC_Os04g38930OsAffx.4020.1.S1_at11/114+22912572..22914401Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g38940Os.26548.1.S1_at11/114+22915154..22918004Integral membrane protein, expressed
LOC_Os04g38950Os.6876.1.S1_at11/114+22920087..22923716Anthranilate synthase component II, putative, expressed
LOC_Os04g38960Os.33954.2.S1_at11/114+22925967..22928295expressed protein
LOC_Os04g38970Os.32953.1.S2_at11/114+22929129..22932637expressed protein
LOC_Os04g38970Os.32953.1.S1_at11/114+22929129..22932637expressed protein
LOC_Os04g38980Os.53838.1.S1_at6/114+22934700..22939402pentatricopeptide, putative, expressed
LOC_Os04g38990OsAffx.29482.5.S1_x_at11/114+22940714..22942666hypothetical protein
LOC_Os04g38990OsAffx.29482.3.S1_x_at3/114+22940714..22942666hypothetical protein
LOC_Os04g39000NANA4+22944247..22944735Rf1 protein, mitochondrial precursor, putative
LOC_Os04g39010Os.50287.1.S1_at11/114+22946455..22947228heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009618biological_processresponse to pathogenic bacteria
GO:0004049molecular_functionanthranilate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6876.1.S1_at--592--8791Chr04:22921302..22921326 (25 bp)
TGTTCTGGAACTTGGACCTACCATC
LOC_Os04g38950
Os.6876.1.S1_at--329--3191Chr04:22921276..22921300 (25 bp)
CAATTTTTGGTGTCTGCATGGGTCT
LOC_Os04g38950
Os.6876.1.S1_at--1045--5551Chr04:22921135..22921159 (25 bp)
GAAAGATTATCCGTGCTCCTTCTGG
LOC_Os04g38950
Os.6876.1.S1_at--447--4791Chr04:22921121..22921145 (25 bp)
GCTCCTTCTGGTGTCATGCATGGAA
LOC_Os04g38950
Os.6876.1.S1_at--588--5531Chr04:22921099..22921123 (25 bp)
GAAAAAGCTCTCCAGTTCGCTACGA
LOC_Os04g38950
Os.6876.1.S1_at--12--3291Chr04:22920577..22920597 (21 bp)
CAAACCCATTTACCGCTGCAAGATA
LOC_Os04g38950
Os.6876.1.S1_at--1007--2791Chr04:22920487..22920511 (25 bp)
AAGATGGCCTTATCATGGCTGCTCG
LOC_Os04g38950
Os.6876.1.S1_at--1161--2831Chr04:22920354..22920479 (25 bp)
AAGTACAGGCACATCCAGGGAGTCC
LOC_Os04g38950
Os.6876.1.S1_at--770--10051Chr04:22920225..22920249 (25 bp)
TAGTAGACGCTAGCTGTTCAGGCAA
LOC_Os04g38950
Os.6876.1.S1_at--1114--2331Chr04:22920131..22920155 (25 bp)
AAAGAGCTCTCCTTTTGTCACATTC
LOC_Os04g38950
Os.6876.1.S1_at--928--7091Chr04:22920115..22920139 (25 bp)
GTCACATTCGTTTGGTTCGTTGTAA
LOC_Os04g38950
Target Sequence 
TGTTCTGGAACTTGGACCTACCATCCCAATTTTTGGTGTCTGCATGGGTCTGCAGTGTATCGGGGAAGCTTTTGGAGGAA
AGATTATCCGTGCTCCTTCTGGTGTCATGCATGGAAAAAGCTCTCCAGTTCGCTACGATGAGGAGCTAGGGAAGGCCTTG
TTCAATGGCTTGCCAAACCCATTTACCGCTGCAAGATACCATAGCTTGGTGATCGAGCAGGAGACCTTCCCCCATGACGC
TCTGGAAGCCACCGCGTGGACTGAAGATGGCCTTATCATGGCTGCTCGCCACAAGAAGTACAGGCACATCCAGGGAGTCC
AATTCCACCCAGAGAGCATCATCACCCCAGAAGGCAAGAGGNNNNTTCTCAACTTCGTGAGGTTCATCGAGGAGCTGGAG
AAGCAGCGTGCCGGAGAGAAGAACTAGTAGACGCTAGCTGTTCAGGCAAAAGTAGAAAGGGGCTTAAGCCGGGTAGATTC
AGGGCAGAAAGTGAAAAAGGGTAGGAGTAATAAGGGAAAAAGAGCTCTCCTTTTGTCACATTCGTTTGGTTCGTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis