Browse Element(s) Details

Os.7138.1.A1_x_at

Description

gb:AK060776.1
DB_XREF= gi:32970794
TID=Os.7138.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7138 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-033-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B12, full insert sequence.
FL= gb:AK060776.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g36070	10/11	signal peptide peptidase family protein, expressed
LOC_Os02g02530	2/11	signal peptide peptidase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g36050	Os.16240.1.A1_s_at	11/11	5	+	21259032..21262184	Protein kinase domain containing protein, expressed
LOC_Os05g36050	OsAffx.14981.1.S1_at	10/11	5	+	21259032..21262184	Protein kinase domain containing protein, expressed
LOC_Os05g36050	Os.7112.1.S1_at	1/11	5	+	21259032..21262184	Protein kinase domain containing protein, expressed
LOC_Os05g36060	Os.41695.15.S1_s_at	11/11	5	+	21271414..21278161	transposon protein, putative, Mutator sub-class
LOC_Os05g36060	Os.41695.3.S1_x_at	9/11	5	+	21271414..21278161	transposon protein, putative, Mutator sub-class
LOC_Os05g36060	Os.41695.5.S1_x_at	9/11	5	+	21271414..21278161	transposon protein, putative, Mutator sub-class
LOC_Os05g36060	Os.41695.2.S1_x_at	8/11	5	+	21271414..21278161	transposon protein, putative, Mutator sub-class
LOC_Os05g36060	Os.41695.4.S1_x_at	1/11	5	+	21271414..21278161	transposon protein, putative, Mutator sub-class
LOC_Os05g36070	Os.7138.1.A1_x_at	10/11	5	+	21286980..21293326	signal peptide peptidase family protein, expressed
LOC_Os05g36070	Os.50759.1.S1_at	9/11	5	+	21286980..21293326	signal peptide peptidase family protein, expressed
LOC_Os05g36070	Os.46111.1.S1_at	4/11	5	+	21286980..21293326	signal peptide peptidase family protein, expressed
LOC_Os05g36080	Os.43567.1.S1_x_at	3/11	5	+	21294736..21299522	transposon protein, putative, unclassified
LOC_Os05g36080	Os.53217.1.S1_x_at	3/11	5	+	21294736..21299522	transposon protein, putative, unclassified
LOC_Os05g36080	Os.38172.1.S1_x_at	3/11	5	+	21294736..21299522	transposon protein, putative, unclassified
LOC_Os05g36090	Os.23220.1.S1_at	11/11	5	+	21305604..21309490	DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0006508	biological_process	proteolysis
GO:0008233	molecular_function	peptidase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7138.1.A1_x_at--164--35	1	Chr05:21290476..21290496 (21 bp)	ATAAAGCTTCTATTTCCTACAGGTG	LOC_Os05g36070
Os.7138.1.A1_x_at--573--1013	1	Chr05:21290516..21290540 (25 bp)	TATGCTTGGCCTTGGTGACATTGTA	LOC_Os05g36070
Os.7138.1.A1_x_at--668--997	1	Chr05:21291393..21291412 (20 bp)	TACCTGGTATATTTGTGGCACTTGC	LOC_Os05g36070
Os.7138.1.A1_x_at--510--1071	1	Chr05:21291409..21291433 (25 bp)	TTGCGCTGCGTTTTGATGTCTCAAG	LOC_Os05g36070
Os.7138.1.A1_x_at--474--31	1	Chr05:21291475..21291499 (25 bp)	ATACCGTGGGTCTGACTGTGACAAT	LOC_Os05g36070
Os.7138.1.A1_x_at--523--269	1	Chr05:21291520..21291928 (25 bp)	AAGCTGCACAGCCTGCTCTGTTGTA	LOC_Os05g36070
Os.7138.1.A1_x_at--1130--377	2	Chr05:21291919..21291943 (25 bp)	CTCTGTTGTACATTGTTCCTGGTGT	LOC_Os05g36070
Os.7138.1.A1_x_at--383--661	2	Chr05:21291944..21291968 (25 bp)	GATTGGTTTTGTTGCTGTTCACTGT	LOC_Os05g36070
Os.7138.1.A1_x_at--801--981	1	NONE	TAAAGCCGCTCCTTGAGTACAACGA	NONE
Os.7138.1.A1_x_at--647--1007	1	Chr05:21293110..21293134 (25 bp)	TATGTAAGGTCTTCGGCATCTAAGT	LOC_Os05g36070
Os.7138.1.A1_x_at--109--585	1	Chr05:21293144..21293168 (25 bp)	GACCTTTGGGATACAAGCTCACTTA	LOC_Os05g36070

Target Sequence

ATAAAGCTTCTATTTCCTACAGGTGATGCTGCACGCCCGTTCTCTATGCTTGGCCTTGGTGACATTGTAATACCTGGTAT
ATTTGTGGCACTTGCGCTGCGTTTTGATGTCTCAAGAGGAATTAAGAACCGCTATTTTAATAGTGCATTTTTGGGTTATA
CCGTGGGTCTGACTGTGACAATAATAGTGNTGAACTGGTTCCAAGCTGCACAGCCTGCTCTGTTGTACATTGTTCCTGGT
GTGATTGGTTTTGTTGCTGTTCACTGTTTGTGGAATGGTGAAGTAAAGCCGCTCCTTGAGTACAACGAGTCCAAAGCGGA
AGAGGAGGAAGCTTGTGAAGAAGATACAGATAGCAAGCANAACAAAAAGAAAGAGTAGGGCTCTAACAAGTAACAATCAT
ACCTTGAGGACTAGAATATTCAGAAACTTTATGTAAGGTCTTCGGCATCTAAGTAGGCTGGATGACCTTTGGGATACAAG
CTCACTTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis