Browse Element(s) Details


Os.7525.1.S1_at

Description gb:AK065423.1
DB_XREF= gi:32975441
TID=Os.7525.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0401G10.23 (P0401G10.23), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020F11, full insert sequence.
FL= gb:AK065423.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7300011/11Copine family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72970Os.20750.1.S1_at9/111+42652671..42655912expressed protein
LOC_Os01g72980Os.37762.2.S1_x_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_a_at11/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72980Os.37762.1.S1_at10/111+42656135..42662602Glucose-inhibited division protein A, putative, expressed
LOC_Os01g72990Os.15212.1.A1_a_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_s_at11/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.4937.1.S1_x_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g72990OsAffx.26592.1.S1_at2/111+42663065..42675564leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os01g73000Os.7525.1.S1_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73000OsAffx.11835.1.S1_x_at11/111+42677791..42682124Copine family protein, expressed
LOC_Os01g73020Os.14648.1.S1_at11/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73020OsAffx.24022.1.S1_x_at5/111+42688180..42690476Uncharacterised protein family containing protein, expressed
LOC_Os01g73030NANA1+42699259..42699844hypothetical protein
LOC_Os01g73040Os.26443.1.S1_at9/111+42704042..42708367CBS domain-containing protein, putative, expressed
LOC_Os01g73040OsAffx.13398.1.S1_at1/111+42704042..42708367CBS domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7525.1.S1_at--550--5411Chr01:42678312..42678336 (25 bp)
GAACTCGGAAGCACAAGGACTCTCA
LOC_Os01g73000
Os.7525.1.S1_at--1041--951Chr01:42678297..42678321 (25 bp)
AGGACTCTCAATTCATGCCAAGATG
LOC_Os01g73000
Os.7525.1.S1_at--412--8931Chr01:42678140..42678164 (25 bp)
TGACCTGTGATGCTTGGCCCAAAGA
LOC_Os01g73000
Os.7525.1.S1_at--1022--3431Chr01:42678103..42678127 (25 bp)
CAGTTGCGGAGATGGCTTTGCTGCT
LOC_Os01g73000
Os.7525.1.S1_at--584--6651Chr01:42678073..42678097 (25 bp)
GTTGATCTTCAGAGACAATCCTAAT
LOC_Os01g73000
Os.7525.1.S1_at--871--7331Chr01:42678031..42678055 (25 bp)
GTGAAGTACCAATACATCCTTTCCT
LOC_Os01g73000
Os.7525.1.S1_at--1139--2091Chr01:42678018..42678042 (25 bp)
ACATCCTTTCCTTTTGTCTTGCAGA
LOC_Os01g73000
Os.7525.1.S1_at--565--2971Chr01:42677872..42677896 (25 bp)
AATGGATCAGCTACGTTACGTGCTC
LOC_Os01g73000
Os.7525.1.S1_at--1146--7311Chr01:42677853..42677877 (25 bp)
GTGCTCAGCTCGTTGTAATCTATTT
LOC_Os01g73000
Os.7525.1.S1_at--157--1511Chr01:42677827..42677851 (25 bp)
AGCAGCTGATTGTGTTATTTACTTC
LOC_Os01g73000
Os.7525.1.S1_at--621--9731Chr01:42677796..42677820 (25 bp)
TCAATTTCTACTCCCTAGTTTTTGG
LOC_Os01g73000
Target Sequence 
GAACTCGGAAGCACAAGGACTCTCAATTCATGCCAAGATGCGGATGGCGTGAAAACTATGTGAAAAAAAAGGCTAAATTA
AACTATGCTGGATTAGTTTCAGTTTCAAAGGACAGGTATATCCTTTGGGATATTGTATTTGTTTCTTTTTCTTGTATGTA
GTAGGAATAAGCTGACCTGTGATGCTTGGCCCAAAGAACTTNACCGAAGGCAGTTGCGGAGATGGCTTTGCTGCTGCATT
GTTGATCTTCAGAGACAATCCTAATTGGGACGATTTCAAGTAGTGAAGTACCAATACATCCTTTCCTTTTGTCTTGCAGA
TCAAATTCCCTGTGACTGCAATCGACCTGTTNTAATTGCAGGGATATAAAAGTGTGAAACAATGGGAGAAACACNACNGG
TACCAGTCATCTTATTNTGAAACTCGTAATGGAGGTCGATCTGAATGGATCAGCTACGTTACGTGCTCAGCTCGTTGTAA
TCTATTTTAGCAGCTGATTGTGTTATTTACTTCATCTTTTCAATTTCTACTCCCTAGTTTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7525.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis