Browse Element(s) Details


Os.8369.1.S1_at

Description gb:AK058846.1
DB_XREF= gi:32968864
TID=Os.8369.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8369 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative telomere repeat binding factor (P0415C01.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-004-G05, full insert sequence.
FL= gb:AK058846.1 gb:AK103040.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4067011/11single myb histone 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein
LOC_Os01g40660Os.45941.1.S1_at11/111+23313596..23314735embryo-abundant protein, putative, expressed
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8369.1.S1_at--560--6211Chr01:23318112..23318136 (25 bp)
GAGGCTGACGCTGCAAAGGCTTTTC
LOC_Os01g40670
Os.8369.1.S1_at--575--911Chr01:23318128..23318152 (25 bp)
AGGCTTTTCTTGATGCTGTTGTGAC
LOC_Os01g40670
Os.8369.1.S1_at--316--6351Chr01:23318139..23318163 (25 bp)
GATGCTGTTGTGACCACGATGCAAA
LOC_Os01g40670
Os.8369.1.S1_at--911--3411Chr01:23318165..23318276 (25 bp)
CAGAAATCATGCTTCTGCGATGCTT
LOC_Os01g40670
Os.8369.1.S1_at--426--4751Chr01:23318284..23318308 (25 bp)
GCTGATCTTCTCTACGGATTCAGAT
LOC_Os01g40670
Os.8369.1.S1_at--393--6571Chr01:23318300..23318324 (25 bp)
GATTCAGATTGGGTTTCAGCCAGTG
LOC_Os01g40670
Os.8369.1.S1_at--940--1411Chr01:23318335..23318359 (25 bp)
AGACAACGCTGGTGTTCTGCTACAA
LOC_Os01g40670
Os.8369.1.S1_at--427--8851Chr01:23318441..23318465 (25 bp)
TGATCCTGAACCCTAACTACTCATA
LOC_Os01g40670
Os.8369.1.S1_at--1082--9951Chr01:23318616..23318640 (25 bp)
TAGCCTTTTCCCTTTGGTCAAGCGA
LOC_Os01g40670
Os.8369.1.S1_at--219--5671Chr01:23318672..23318696 (25 bp)
GACATGTCGTATGAGCTGTGCTAAT
LOC_Os01g40670
Os.8369.1.S1_at--384--5111Chr01:23318762..23318786 (25 bp)
GCACATGCTGCAGTCATTGTACTCT
LOC_Os01g40670
Target Sequence 
GAGGCTGACGCTGCAAAGGCTTTTCTTGATGCTGTTGTGACCACGATGCAAAACAGAAATCATGCTTCTGCGATGCTTNG
AGCTTGCTGATCTTCTCTACGGATTCAGATTGGGTTTCAGCCAGTGAAACTTGTCAAGACAACGCTGGTGTTCTGCTACA
AAGCTTTTGTTGATAGATGAGATTNTTGTATAGCCTTATAGATCAAGATGCTTTAGTGAGGGGGGTTTTCAACATTTTGC
TNTGATCCTGAACCCTAACTACTCATATTTGAGTTGATGTCATCCAGNGGTATCCAATTAGATACATATATCNCGTGACT
GGTGTTTGTGCTATGTTAAGACAATCAACAACTCCAATAACAAGGGNGAATGAGAATTTAGTNTGAATTTCCCCCCGTTT
TGTATTGCTTTTGTAATTAGCCTTTTCCCTTTGGTCAAGCGAAGTCATGAAATAGTAGAATTGTAGTTGGAAAGACATGT
CGTATGAGCTGTGCTAATTTATGGACATGGCTTTAATATGACAAGTTGGTGGTGGTGTTTTAGCATTACATTACAACTAA
TTAGCACATGCTGCAGTCATTGTACTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8369.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis