Browse Element(s) Details


Os.8463.1.S3_at

Description gb:AK120605.1
DB_XREF= gi:37990228
TID=Os.8463.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8463 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033104N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013150C07, full insert sequence.
FL= gb:AK066026.1 gb:AK102711.1 gb:AK120605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4918011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49210OsAffx.4661.1.S1_x_at11/115+28155290..28157769WRKY DNA binding domain containing protein, expressed
LOC_Os05g49220Os.24720.1.S1_at11/115+28158732..28161500GTP-binding protein Era containing protein, expressed
LOC_Os05g49230Os.20336.1.S1_at11/115+28161759..28166305FtsJ-like methyltransferase family protein, expressed
LOC_Os05g49240NANA5+28170244..28171787RADIALIS, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8463.1.S3_at--883--1991Chr05:28144985..28145009 (25 bp)
ACTCGCTTCCTGCAGATGAAGTGCA
LOC_Os05g49180
Os.8463.1.S3_at--242--9411Chr05:28145084..28145108 (25 bp)
TCGTCATCATCTACTCTTTGCGGCA
LOC_Os05g49180
Os.8463.1.S3_at--892--6251Chr05:28145158..28145182 (25 bp)
GATGGGCTCCGCTGCAATCGGTGCA
LOC_Os05g49180
Os.8463.1.S3_at--126--5191Chr05:28145171..28145195 (25 bp)
GCAATCGGTGCAGCCGCGTCGATGA
LOC_Os05g49180
Os.8463.1.S3_at--1145--6971Chr05:28145231..28145255 (25 bp)
GTACCGGATGCGCTCGTGGAATTTC
LOC_Os05g49180
Os.8463.1.S3_at--403--6711Chr05:28145272..28145296 (25 bp)
GTTCGAGGTCGTTATCGTCGTCGTC
LOC_Os05g49180
Os.8463.1.S3_at--213--5611Chr05:28145351..28145375 (25 bp)
GACAAGAAGCCAGGAGCCACCTCTT
LOC_Os05g49180
Os.8463.1.S3_at--1029--10451Chr05:28145435..28145459 (25 bp)
TTACGCGCTACTATCGAACTCTTTC
LOC_Os05g49180
Os.8463.1.S3_at--190--5471Chr05:28145450..28145474 (25 bp)
GAACTCTTTCGCTTCATAGCGTTGA
LOC_Os05g49180
Os.8463.1.S3_at--345--9811Chr05:28145488..28145512 (25 bp)
TAACTTGGGTTTAATCTCCTCTAAT
LOC_Os05g49180
Os.8463.1.S3_at--664--451Chr05:28145501..28145525 (25 bp)
ATCTCCTCTAATCCCAAACTATTTT
LOC_Os05g49180
Target Sequence 
ACTCGCTTCCTGCAGATGAAGTGCAGCGGCAGGTCGCCGCGTAGGCCTAGTAGCGGCAGCAGCTCGCCGCGTATCCACGC
CGGCGGCGGGGGAGCGGCATCGTCATCATCTACTCTTTGCGGCACGGCGGCGCGAGGGACGTGCGCCGCCACCGCCTGCA
ACGGGACGGCGTCGATGGGCTCCGCTGCAATCGGTGCAGCCGCGTCGATGAGCATGGGCTCCCCCGCGGCGGACACTTCC
GCCGTGGTACCGGATGCGCTCGTGGAATTTCCAACGGCGGCGGCGCTGTTCGAGGTCGTTATCGTCGTCGTCTGGGGGGC
TAATTGGGCGGCAGCGTCGCCGGGGCTGACGGACGACGGCGAGAGCGACAAGAAGCCAGGAGCCACCTCTTCCCTGAACC
TCGCGAGCGACGTCGTGACAGTCGCCCACGACTGCACCTTCTTTGCGTCCTTACGCGCTACTATCGAACTCTTTCGCTTC
ATAGCGTTGAGCTACTAATAATTTAACTTGGGTTTAATCTCCTCTAATCCCAAACTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8463.1.S3_at     

Putative homologies in rice

Putative homologies in arabidopsis