Browse Element(s) Details


Os.8575.1.S1_at

Description gb:AK064710.1
DB_XREF= gi:32974728
TID=Os.8575.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8575 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B11, full insert sequence.
FL= gb:AK064710.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0820011/11expressed protein
LOC_Os03g561401/11KNOX1 domain containing protein
LOC_Os10g409901/11Flavonol synthase/flavanone 3-hydroxylase, putative, expressed
LOC_Os03g561101/11KNOX1 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08140Os.50327.1.S1_at11/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.2.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08140OsAffx.11634.1.S1_x_at2/1112+4162623..4166892pentatricopeptide, putative, expressed
LOC_Os12g08150OsAffx.7522.1.S1_at11/1112+4167848..4168426hypothetical protein
LOC_Os12g08160OsAffx.19549.1.S1_at11/1112+4169586..4170398hypothetical protein
LOC_Os12g08170Os.48783.1.S1_at11/1112+4170980..4175895dihydrolipoamide S-acetyltransferase, putative, expressed
LOC_Os12g08180Os.52520.1.S1_at11/1112+4177403..4181622Leucine Rich Repeat family protein, expressed
LOC_Os12g08189NANA12+4183418..4183749NA
LOC_Os12g08200Os.8575.1.S1_at11/1112+4188057..4188988expressed protein
LOC_Os12g08210OsAffx.31641.1.S1_at11/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_x_at6/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.49672.1.S1_at2/1112+4190540..4192666expressed protein
LOC_Os12g08210Os.5857.1.S1_at1/1112+4190540..4192666expressed protein
LOC_Os12g08220Os.53427.1.S1_at11/1112+4192942..4197866Histone deacetylase family protein, expressed
LOC_Os12g08230OsAffx.31642.1.S1_s_at11/1112+4199548..4201861expressed protein
LOC_Os12g08230OsAffx.31642.1.S1_at11/1112+4199548..4201861expressed protein
LOC_Os12g08240Os.49351.2.S1_x_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.2.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08240OsAffx.18176.1.S1_at1/1112+4202816..4205440hypothetical protein
LOC_Os12g08250OsAffx.28061.1.S1_at5/1112+4206341..4206757hypothetical protein
LOC_Os12g08260Os.17909.1.S1_a_at11/1112+4208150..42124412-oxoisovalerate dehydrogenase alpha subunit, mitochondrial precursor, putative, expressed
LOC_Os12g08270OsAffx.19550.1.S1_at11/1112+4212187..4215341expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0008152biological_processmetabolism
GO:0009691biological_processcytokinin biosynthesis
GO:0009736biological_processcytokinin mediated signaling
GO:0009813biological_processflavonoid biosynthesis
GO:0009934biological_processregulation of meristem organization
GO:0010094biological_processspecification of carpel identity
GO:0010261biological_processorgan senescence (sensu Magnoliophyta)
GO:0019827biological_processstem cell maintenance
GO:0045165biological_processcell fate commitment
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016682molecular_functionoxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8575.1.S1_at--1010--4811Chr12:4188604..4188628 (25 bp)
GCTCTTCTTGGCTCACAAATCCAAT
LOC_Os12g08200
Os.8575.1.S1_at--883--1411Chr12:4188638..4188662 (25 bp)
AGAAAGGCACCACCAATCTGAAAAT
LOC_Os12g08200
Os.8575.1.S1_at--209--451Chr12:4188731..4188755 (25 bp)
ATCTATACATTTTTCATCCTACCAG
LOC_Os12g08200
Os.8575.1.S1_at--307--571Chr12:4188746..4188770 (25 bp)
ATCCTACCAGAATCCAGAGTTTGAC
LOC_Os12g08200
Os.8575.1.S1_at--698--851Chr12:4188780..4188804 (25 bp)
ATGGCTATGATTCTTTTCTTTTTTC
LOC_Os12g08200
Os.8575.1.S1_at--357--733Chr12:4188839..4188863 (25 bp)
ATGTTCAGGCCTTCAGGGTTTTGTC
LOC_Os12g08200
Os.8575.1.S1_at--1035--10811Chr12:4188859..4188883 (25 bp)
TTGTCTCTTTTGTTTGTCTGATGAA
LOC_Os12g08200
Os.8575.1.S1_at--717--732Chr12:4188883..4188907 (25 bp)
ATGTTCAGGGTCTGATACTCTCTGA
LOC_Os12g08200
Os.8575.1.S1_at--285--6371Chr12:4188906..4188930 (25 bp)
GATCCCGCTCGTCTTTTTTGTAATG
LOC_Os12g08200
Os.8575.1.S1_at--101--7931Chr12:4188936..4188960 (25 bp)
GGATTTGGCGTCTGTTTGATACTAC
LOC_Os12g08200
Os.8575.1.S1_at--992--8811Chr12:4188952..4188976 (25 bp)
TGATACTACTTGATTTTAGCTGCCG
LOC_Os12g08200
Target Sequence 
GCTCTTCTTGGCTCACAAATCCAATGCTGCATCAAGAAAGGCACCACCAATCTGAAAATTCTGATTGACAGTCAGAAGAA
GCAGTAGATGATTGCATGCATGATATACCAGGTGTATATATCGATCGATCTATACATTTTTCATCCTACCAGAATCCAGA
GTTTGACTCATAGTTAATGGCTATGATTCTTTTCTTTTTTCTTCTTCTTCTTCTCTACTTTTGATTTTCTGATGAATGTT
CAGGCCTTCAGGGTTTTGTCTCTTTTGTTTGTCTGATGAATGTTCAGGGTCTGATACTCTCTGATCCCGCTCGTCTTTTT
TGTAATGCCATTGGATTTGGCGTCTGTTTGATACTACTTGATTTTAGCTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis