Browse Element(s) Details


Os.8693.1.S1_x_at

Description gb:AU097541
DB_XREF= gi:8860223
DB_XREF=AU097541
CLONE=S6042
TID=Os.8693.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0701D05.10 (P0701D05.10), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0715011/11expressed protein
LOC_Os05g072401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g07110Os.51871.1.S1_at11/111+3342005..3351851BRCA2 repeat family protein, expressed
LOC_Os01g07120Os.21563.1.S1_a_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07120Os.21563.1.S2_at11/111+3353185..3358006AP2 domain containing protein, expressed
LOC_Os01g07130Os.32760.1.S1_at11/111+3355336..3357462expressed protein
LOC_Os01g07140Os.7217.1.S1_a_at11/111+3358811..3364460Kelch motif family protein, expressed
LOC_Os01g07150Os.8693.1.S1_x_at11/111+3373395..3374007expressed protein
LOC_Os01g07150Os.55406.1.S1_x_at1/111+3373395..3374007expressed protein
LOC_Os01g07160OsAffx.22760.2.S1_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07160OsAffx.22760.2.S1_s_at11/111+3377529..3378860F-box domain containing protein
LOC_Os01g07170Os.14483.1.S1_x_at9/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07170Os.46162.1.S1_at2/111+3383709..3387558HORMA domain containing protein, expressed
LOC_Os01g07180OsAffx.28142.2.S1_s_at11/111+3388559..3389813hypothetical protein
LOC_Os01g07190OsAffx.29435.1.S1_at9/111+3392564..3393112hypothetical protein
LOC_Os01g07200Os.32568.1.S1_at11/111+3394159..3397306nuclease, putative, expressed
LOC_Os01g07212OsAffx.23145.1.S1_s_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.18398.1.S1_at11/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212OsAffx.23145.1.S1_at10/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed
LOC_Os01g07212Os.20407.1.S1_at1/111+3398090..3404495Staphylococcal nuclease homologue family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8693.1.S1_x_at--1079--4351Chr01:3373534..3373558 (25 bp)
CCAACCACGTTCTGAGCCGGCCGTG
LOC_Os01g07150
Os.8693.1.S1_x_at--648--7951Chr01:3373585..3373609 (25 bp)
GGATACTCATCGTGTCGCCGGAGTC
LOC_Os01g07150
Os.8693.1.S1_x_at--848--8533Chr05:3811276..3811300 (25 bp)
TGGAGCGCGGCGAGATCTACTTCCT
LOC_Os05g07240
Os.8693.1.S1_x_at--43--9312Chr03:18603145..18603169 (25 bp)
TCCCCGACGCCAAGAGGAGGACGAG
NONE
Os.8693.1.S1_x_at--963--4072Chr03:18603149..18603173 (25 bp)
CGACGCCAAGAGGAGGACGAGCACC
NONE
Os.8693.1.S1_x_at--856--1694Chr11:18655289..18655313 (25 bp)
ACCACGTCCGCAGCAAGTCGGAGGG
NONE
Os.8693.1.S1_x_at--764--6351Chr01:3373752..3373776 (25 bp)
GATCGGTTGGGCAGCCCGGCCGGCA
LOC_Os01g07150
Os.8693.1.S1_x_at--1058--691Chr01:3373803..3373827 (25 bp)
ATGAGGGCGCAGAAGCAGCAGCACC
LOC_Os01g07150
Os.8693.1.S1_x_at--423--5391Chr01:3373814..3373838 (25 bp)
GAAGCAGCAGCACCAACACCGGCGG
LOC_Os01g07150
Os.8693.1.S1_x_at--1008--9691Chr01:3373945..3373969 (25 bp)
TCACAGTGGTTTTTTTGCCTGGTGT
LOC_Os01g07150
Os.8693.1.S1_x_at--210--10652Chr11:18655550..18655574 (25 bp)
TTCCTCTGGTGCCCGGTAAATATTT
NONE
Target Sequence 
CCAACCACGTTCTGAGCCGGCCGTGCTCGTCGCAGCAGGGGGCGGCGGGGCGGATACTCATCGTGTCGCCGGAGTCGGAG
CTGGAGCGCGGCGAGATCTACTTCCTCATCCCCGCCGCCTCCGTCCCCGACGCCAAGAGGAGGACGAGCACCGGCGGCGG
CGGCGCCGGCCGCGGGCACCACGTCCGCAGCAAGTCGGAGGGCAGCGCCGTCGCCGCCGATCGGTTGGGCAGCCCGGCCG
GCAGCGCGTCGCCGGAGACGACGAGGATGATGAGGGCGCAGAAGCAGCAGCACCAACACCGGCGGCGCATGAGCACCGGC
AGCCATGCCTCGCCGTGGCAGCCGCACCTCTCGTGCATCACCGAGGATCCCTGANTANCGCCTAGCTTAANTTCTTTTTC
TTCTCTGAANTCACAGTGGTTTTTTTGCCTGGTGTGTAAANTTCCTCTGGTGCCCGGTAAATATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8693.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis