Browse Element(s) Details


Os.9018.1.S1_at

Description gb:BQ909111
DB_XREF= gi:22307889
DB_XREF=T021E04
CLONE=T021E04
TID=Os.9018.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9018 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T06699 (A.thaliana) T06699 zinc finger protein T29H11.50 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0569011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05630Os.54405.1.S1_at2/113+2790889..2793111expressed protein
LOC_Os03g05640Os.5086.1.S1_at10/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.57546.1.S1_x_at2/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.46784.1.S1_x_at1/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05650Os.57503.1.A1_at7/113+2798108..2799229expressed protein
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05670Os.47130.4.A1_x_at2/113+2810854..2811177retrotransposon protein, putative, unclassified
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein
LOC_Os03g05710Os.7568.1.S1_a_at11/113+2822968..2823937GCN5-related N-acetyltransferase, putative, expressed
LOC_Os03g05720Os.9622.1.S1_at11/113+2824838..2830793phage head-tail adaptor family protein, expressed
LOC_Os03g05730Os.4689.1.S1_at11/113+2831406..2835792Cell division cycle protein 48 homolog, putative, expressed
LOC_Os03g05740Os.4190.1.S1_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05740Os.48663.1.A1_s_at11/113+2836239..2839339Ras-related protein RHN1, putative, expressed
LOC_Os03g05750Os.49591.1.S1_at9/113+2845490..2847256heavy metal-associated domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9018.1.S1_at--715--1011Chr03:2820409..2820433 (25 bp)
AGGTTGCCACTTTTCATGTTACTGA
LOC_Os03g05690
Os.9018.1.S1_at--580--2351Chr03:2820456..2820480 (25 bp)
AAAGCTCTAGCTGTTGAGGCCATGC
LOC_Os03g05690
Os.9018.1.S1_at--1147--8871Chr03:2820470..2820494 (25 bp)
TGAGGCCATGCTTGTTGTACCAGAT
LOC_Os03g05690
Os.9018.1.S1_at--200--6451Chr03:2820492..2820516 (25 bp)
GATCACGTATTTAACCACCTGACGT
LOC_Os03g05690
Os.9018.1.S1_at--928--271Chr03:2820520..2820544 (25 bp)
ATAGGCCTAGTGTTTGTTCCTTCGT
LOC_Os03g05690
Os.9018.1.S1_at--206--8811Chr03:2820534..2820558 (25 bp)
TGTTCCTTCGTTAGCAATGTGTTTA
LOC_Os03g05690
Os.9018.1.S1_at--278--4171Chr03:2820601..2820625 (25 bp)
CCCTGATGCATCAACGTAGATTTTC
LOC_Os03g05690
Os.9018.1.S1_at--190--9791Chr03:2820627..2820651 (25 bp)
TAAGCAGCTGATCTTTCCCATTTAC
LOC_Os03g05690
Os.9018.1.S1_at--143--7671Chr03:2820654..2820678 (25 bp)
GGGATCATTCATTCTTTCTTCAGTC
LOC_Os03g05690
Os.9018.1.S1_at--740--7951Chr03:2820706..2820730 (25 bp)
GGATAACTTCCAAGTACCATTTGAA
LOC_Os03g05690
Os.9018.1.S1_at--563--8791Chr03:2820736..2820760 (25 bp)
TGTTAATGTCTCATGGTCTCAGTGA
LOC_Os03g05690
Target Sequence 
AGGTTGCCACTTTTCATGTTACTGATGAGTGATCACAGCTGGGGGCAAAAGCTCTAGCTGTTGAGGCCATGCTTGTTGTA
CCAGATCACGTATTTAACCACCTGACGTNTGATAGGCCTAGTGTTTGTTCCTTCGTTAGCAATGTGTTTAGTGTAGAAAG
TAGAGAAATAGTTGGGGGTTAAGGATTGTACCCCCTGATGCATCAACGTAGATTTTCATAAGCAGCTGATCTTTCCCATT
TACATGGGATCATTCATTCTTTCTTCAGTCCGTAAAGTTTATGAATACAGATCACTTGGATAACTTCCAAGTACCATTTG
AAAAATGTGTTAATGTCTCATGGTCTCAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9018.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis